diff variant_effect_predictor/Bio/Graphics/Glyph/track.pm @ 0:21066c0abaf5 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/variant_effect_predictor/Bio/Graphics/Glyph/track.pm	Fri Aug 03 10:04:48 2012 -0400
@@ -0,0 +1,92 @@
+package Bio::Graphics::Glyph::track;
+
+use strict;
+use Bio::Graphics::Glyph;
+use vars '@ISA';
+@ISA = 'Bio::Graphics::Glyph';
+
+# track sets connector to empty
+sub connector {
+  my $self = shift;
+  return $self->SUPER::connector(@_) if $self->all_callbacks;
+  return 'none';
+}
+
+sub draw {
+  my $self = shift;
+  my ($gd,$left,$top,$partno,$total_parts) = @_;
+  my @parts = $self->parts;
+  for (my $i=0; $i<@parts; $i++) {
+    $parts[$i]->draw($gd,$left,$top,0,1);
+  }
+}
+
+# do nothing for components
+# sub draw_component { }
+
+1;
+
+
+__END__
+
+=head1 NAME
+
+Bio::Graphics::Glyph::track - The "track" glyph
+
+=head1 SYNOPSIS
+
+  See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
+
+=head1 DESCRIPTION
+
+This glyph is used internally by Bio::Graphics::Panel for laying out
+tracks.  It should not be used explicitly.
+
+=head1 BUGS
+
+Please report them.
+
+=head1 SEE ALSO
+
+
+L<Bio::Graphics::Panel>,
+L<Bio::Graphics::Glyph>,
+L<Bio::Graphics::Glyph::arrow>,
+L<Bio::Graphics::Glyph::cds>,
+L<Bio::Graphics::Glyph::crossbox>,
+L<Bio::Graphics::Glyph::diamond>,
+L<Bio::Graphics::Glyph::dna>,
+L<Bio::Graphics::Glyph::dot>,
+L<Bio::Graphics::Glyph::ellipse>,
+L<Bio::Graphics::Glyph::extending_arrow>,
+L<Bio::Graphics::Glyph::generic>,
+L<Bio::Graphics::Glyph::graded_segments>,
+L<Bio::Graphics::Glyph::heterogeneous_segments>,
+L<Bio::Graphics::Glyph::line>,
+L<Bio::Graphics::Glyph::pinsertion>,
+L<Bio::Graphics::Glyph::primers>,
+L<Bio::Graphics::Glyph::rndrect>,
+L<Bio::Graphics::Glyph::segments>,
+L<Bio::Graphics::Glyph::ruler_arrow>,
+L<Bio::Graphics::Glyph::toomany>,
+L<Bio::Graphics::Glyph::transcript>,
+L<Bio::Graphics::Glyph::transcript2>,
+L<Bio::Graphics::Glyph::translation>,
+L<Bio::Graphics::Glyph::triangle>,
+L<Bio::DB::GFF>,
+L<Bio::SeqI>,
+L<Bio::SeqFeatureI>,
+L<Bio::Das>,
+L<GD>
+
+=head1 AUTHOR
+
+Lincoln Stein E<lt>[e-mail]<gt>
+
+Copyright (c) 2001 Cold Spring Harbor Laboratory
+
+This library is free software; you can redistribute it and/or modify
+it under the same terms as Perl itself.  See DISCLAIMER.txt for
+disclaimers of warranty.
+
+=cut