diff variant_effect_predictor/Bio/Graphics/Glyph/span.pm @ 0:21066c0abaf5 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/variant_effect_predictor/Bio/Graphics/Glyph/span.pm	Fri Aug 03 10:04:48 2012 -0400
@@ -0,0 +1,88 @@
+package Bio::Graphics::Glyph::span;
+
+use strict;
+use vars '@ISA';
+@ISA = 'Bio::Graphics::Glyph::anchored_arrow';
+use Bio::Graphics::Glyph::anchored_arrow;
+
+sub no_trunc { 0 }
+
+sub arrowheads {0,0,1,1}
+
+1;
+
+__END__
+
+=head1 NAME
+
+Bio::Graphics::Glyph::span - The "span" glyph
+
+=head1 SYNOPSIS
+
+  See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
+
+=head1 DESCRIPTION
+
+This glyph draws a span that looks like this:
+
+    |-----------------------------|
+
+If one or both ends go off the edges of the panel, they are truncated:
+
+ ----------------------|                    left end off picture
+         |----------------------------      right end off picture
+ -------------------------------------      both ends off picture
+
+=head1 OPTIONS
+
+The standard options are recognized.
+
+=head1 BUGS
+
+Please report them.
+
+=head1 SEE ALSO
+
+
+L<Bio::Graphics::Panel>,
+L<Bio::Graphics::Glyph>,
+L<Bio::Graphics::Glyph::anchored_arrow>,
+L<Bio::Graphics::Glyph::arrow>,
+L<Bio::Graphics::Glyph::cds>,
+L<Bio::Graphics::Glyph::crossbox>,
+L<Bio::Graphics::Glyph::diamond>,
+L<Bio::Graphics::Glyph::dna>,
+L<Bio::Graphics::Glyph::dot>,
+L<Bio::Graphics::Glyph::ellipse>,
+L<Bio::Graphics::Glyph::extending_arrow>,
+L<Bio::Graphics::Glyph::generic>,
+L<Bio::Graphics::Glyph::graded_segments>,
+L<Bio::Graphics::Glyph::heterogeneous_segments>,
+L<Bio::Graphics::Glyph::line>,
+L<Bio::Graphics::Glyph::pinsertion>,
+L<Bio::Graphics::Glyph::primers>,
+L<Bio::Graphics::Glyph::rndrect>,
+L<Bio::Graphics::Glyph::segments>,
+L<Bio::Graphics::Glyph::ruler_arrow>,
+L<Bio::Graphics::Glyph::toomany>,
+L<Bio::Graphics::Glyph::transcript>,
+L<Bio::Graphics::Glyph::transcript2>,
+L<Bio::Graphics::Glyph::translation>,
+L<Bio::Graphics::Glyph::triangle>,
+L<Bio::DB::GFF>,
+L<Bio::SeqI>,
+L<Bio::SeqFeatureI>,
+L<Bio::Das>,
+L<GD>
+
+=head1 AUTHOR
+
+Allen Day E<lt>[e-mail]<gt>.
+
+Copyright (c) 2001 Cold Spring Harbor Laboratory
+
+This library is free software; you can redistribute it and/or modify
+it under the same terms as Perl itself.  See DISCLAIMER.txt for
+disclaimers of warranty.
+
+=cut