Mercurial > repos > vmarcon > cytoscape
changeset 1:0e4dc43800b8 draft
planemo upload commit d28e54b122131899c7ec49abc39f72645da36ecf-dirty
| author | vmarcon |
|---|---|
| date | Fri, 03 Aug 2018 08:11:24 -0400 |
| parents | 6bf83148cae7 |
| children | f0792cd6dee3 |
| files | Cytoscape.xml static/images/network.png static/images/out.insertion_profile.R1.png static/images/out.insertion_profile.R2.png |
| diffstat | 4 files changed, 37 insertions(+), 3 deletions(-) [+] |
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--- a/Cytoscape.xml Thu Aug 02 11:18:49 2018 -0400 +++ b/Cytoscape.xml Fri Aug 03 08:11:24 2018 -0400 @@ -41,7 +41,7 @@ </tests> <!-- [OPTIONAL] Help displayed in Galaxy --> - <help> + <help><![CDATA[ .. class:: infomark @@ -51,7 +51,7 @@ .. class:: infomark -**Galaxy integration** Alexis Dereeper, IRD. +**Galaxy integration** Provided by Southgreen & Dereeper Alexis (IRD) & Marcon Valentin (IFB & INRA) .. class:: infomark @@ -82,6 +82,40 @@ Cytoscape network Log file - </help> + +--------------------------------------------------- + +--------------- +Working example +--------------- + +Input file +========== + +input.json +---------------------------- + +:: + + {"elements": {"nodes": [{ "data": { "id": "MV1", "width": 0.1} }, + { "data": { "id": "MV2", "width": 0.1} }, + { "data": { "id": "MV3", "width": 0.1} }, + { "data": { "id": "haplo6", "width": 0.8 } }, + { "data": { "id": "haplo7", "width": 0.8 } }, + { "data": { "id": "haplo8", "width": 0.8 } }], + "edges": [ + { "data": { "id": "haplo4MV1", "weight": 1, "source": "haplo4", "target": "MV1"} }, + { "data": { "id": "haplo3haplo4", "weight": 1, "source": "haplo3", "target": "haplo4"} }, + { "data": { "id": "haplo5MV3", "weight": 1, "source": "haplo5", "target": "MV3"} }, + { "data": { "id": "MV1MV2", "weight": 1, "source": "MV1", "target": "MV2"} }, + { "data": { "id": "haplo8MV3", "weight": 1, "source": "haplo8", "target": "MV3"} }]}} + +input.json +---------------------------- + +.. image:: $PATH_TO_IMAGES/network.png + :width: 500 px + + ]]></help> </tool>