Mercurial > repos > vipints > fml_gff3togtf

comparison fml_gff_converter_programs/t/UCSC_transcripts.gtf @ 0:4c459744cab1 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author vipints
date Tue, 07 Jun 2011 16:41:06 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:4c459744cab1
1 chr1 hg19_ccdsGene start_codon 861322 861324 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
2 chr1 hg19_ccdsGene CDS 861322 861393 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
3 chr1 hg19_ccdsGene exon 861322 861393 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
4 chr1 hg19_ccdsGene CDS 865535 865716 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
5 chr1 hg19_ccdsGene exon 865535 865716 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
6 chr1 hg19_ccdsGene CDS 866419 866469 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
7 chr1 hg19_ccdsGene exon 866419 866469 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
8 chr1 hg19_ccdsGene CDS 871152 871276 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
9 chr1 hg19_ccdsGene exon 871152 871276 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
10 chr1 hg19_ccdsGene CDS 874420 874509 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
11 chr1 hg19_ccdsGene exon 874420 874509 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
12 chr1 hg19_ccdsGene CDS 874655 874840 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
13 chr1 hg19_ccdsGene exon 874655 874840 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
14 chr1 hg19_ccdsGene CDS 876524 876686 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
15 chr1 hg19_ccdsGene exon 876524 876686 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
16 chr1 hg19_ccdsGene CDS 877516 877631 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
17 chr1 hg19_ccdsGene exon 877516 877631 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
18 chr1 hg19_ccdsGene CDS 877790 877868 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
19 chr1 hg19_ccdsGene exon 877790 877868 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
20 chr1 hg19_ccdsGene CDS 877939 878438 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
21 chr1 hg19_ccdsGene exon 877939 878438 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
22 chr1 hg19_ccdsGene CDS 878633 878757 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
23 chr1 hg19_ccdsGene exon 878633 878757 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
24 chr1 hg19_ccdsGene CDS 879078 879188 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
25 chr1 hg19_ccdsGene exon 879078 879188 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
26 chr1 hg19_ccdsGene CDS 879288 879530 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2";
27 chr1 hg19_ccdsGene stop_codon 879531 879533 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
28 chr1 hg19_ccdsGene exon 879288 879533 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2";
29 chr1 hg19_ccdsGene stop_codon 880074 880076 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
30 chr1 hg19_ccdsGene CDS 880077 880180 0.000000 - 2 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
31 chr1 hg19_ccdsGene exon 880074 880180 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
32 chr1 hg19_ccdsGene CDS 880437 880526 0.000000 - 2 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
33 chr1 hg19_ccdsGene exon 880437 880526 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
34 chr1 hg19_ccdsGene CDS 880898 881033 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
35 chr1 hg19_ccdsGene exon 880898 881033 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
36 chr1 hg19_ccdsGene CDS 881553 881666 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
37 chr1 hg19_ccdsGene exon 881553 881666 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
38 chr1 hg19_ccdsGene CDS 881782 881925 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
39 chr1 hg19_ccdsGene exon 881782 881925 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
40 chr1 hg19_ccdsGene CDS 883511 883612 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
41 chr1 hg19_ccdsGene exon 883511 883612 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
42 chr1 hg19_ccdsGene CDS 883870 883983 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
43 chr1 hg19_ccdsGene exon 883870 883983 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
44 chr1 hg19_ccdsGene CDS 886507 886618 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
45 chr1 hg19_ccdsGene exon 886507 886618 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
46 chr1 hg19_ccdsGene CDS 887380 887519 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
47 chr1 hg19_ccdsGene exon 887380 887519 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
48 chr1 hg19_ccdsGene CDS 887792 887980 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
49 chr1 hg19_ccdsGene exon 887792 887980 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
50 chr1 hg19_ccdsGene CDS 888555 888668 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
51 chr1 hg19_ccdsGene exon 888555 888668 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
52 chr1 hg19_ccdsGene CDS 889162 889272 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
53 chr1 hg19_ccdsGene exon 889162 889272 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
54 chr1 hg19_ccdsGene CDS 889384 889462 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
55 chr1 hg19_ccdsGene exon 889384 889462 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
56 chr1 hg19_ccdsGene CDS 891303 891393 0.000000 - 2 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
57 chr1 hg19_ccdsGene exon 891303 891393 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
58 chr1 hg19_ccdsGene CDS 891475 891595 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
59 chr1 hg19_ccdsGene exon 891475 891595 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
60 chr1 hg19_ccdsGene CDS 892274 892405 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
61 chr1 hg19_ccdsGene exon 892274 892405 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
62 chr1 hg19_ccdsGene CDS 892479 892653 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
63 chr1 hg19_ccdsGene exon 892479 892653 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
64 chr1 hg19_ccdsGene CDS 894309 894461 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
65 chr1 hg19_ccdsGene exon 894309 894461 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
66 chr1 hg19_ccdsGene CDS 894595 894620 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1";
67 chr1 hg19_ccdsGene start_codon 894618 894620 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
68 chr1 hg19_ccdsGene exon 894595 894620 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1";
69 chr1 hg19_ccdsGene start_codon 896074 896076 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
70 chr1 hg19_ccdsGene CDS 896074 896180 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
71 chr1 hg19_ccdsGene exon 896074 896180 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
72 chr1 hg19_ccdsGene CDS 896673 896932 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
73 chr1 hg19_ccdsGene exon 896673 896932 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
74 chr1 hg19_ccdsGene CDS 897009 897130 0.000000 + 2 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
75 chr1 hg19_ccdsGene exon 897009 897130 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
76 chr1 hg19_ccdsGene CDS 897206 897427 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
77 chr1 hg19_ccdsGene exon 897206 897427 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
78 chr1 hg19_ccdsGene CDS 897735 897851 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
79 chr1 hg19_ccdsGene exon 897735 897851 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
80 chr1 hg19_ccdsGene CDS 898084 898297 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
81 chr1 hg19_ccdsGene exon 898084 898297 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
82 chr1 hg19_ccdsGene CDS 898489 898633 0.000000 + 2 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
83 chr1 hg19_ccdsGene exon 898489 898633 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
84 chr1 hg19_ccdsGene CDS 898717 898884 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
85 chr1 hg19_ccdsGene exon 898717 898884 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
86 chr1 hg19_ccdsGene CDS 899300 899388 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
87 chr1 hg19_ccdsGene exon 899300 899388 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
88 chr1 hg19_ccdsGene CDS 899487 899560 0.000000 + 2 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
89 chr1 hg19_ccdsGene exon 899487 899560 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
90 chr1 hg19_ccdsGene CDS 899729 899910 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
91 chr1 hg19_ccdsGene exon 899729 899910 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
92 chr1 hg19_ccdsGene CDS 900343 900568 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
93 chr1 hg19_ccdsGene stop_codon 900569 900571 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
94 chr1 hg19_ccdsGene exon 900343 900571 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1";
95 chr1 hg19_ccdsGene start_codon 901912 901914 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
96 chr1 hg19_ccdsGene CDS 901912 901994 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
97 chr1 hg19_ccdsGene exon 901912 901994 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
98 chr1 hg19_ccdsGene CDS 902084 902183 0.000000 + 1 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
99 chr1 hg19_ccdsGene exon 902084 902183 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
100 chr1 hg19_ccdsGene CDS 905657 905803 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
101 chr1 hg19_ccdsGene exon 905657 905803 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
102 chr1 hg19_ccdsGene CDS 905901 905981 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
103 chr1 hg19_ccdsGene exon 905901 905981 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
104 chr1 hg19_ccdsGene CDS 906066 906138 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
105 chr1 hg19_ccdsGene exon 906066 906138 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
106 chr1 hg19_ccdsGene CDS 906259 906386 0.000000 + 2 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
107 chr1 hg19_ccdsGene exon 906259 906386 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
108 chr1 hg19_ccdsGene CDS 906493 906588 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
109 chr1 hg19_ccdsGene exon 906493 906588 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
110 chr1 hg19_ccdsGene CDS 906704 906784 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
111 chr1 hg19_ccdsGene exon 906704 906784 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
112 chr1 hg19_ccdsGene CDS 907455 907530 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
113 chr1 hg19_ccdsGene exon 907455 907530 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
114 chr1 hg19_ccdsGene CDS 907668 907804 0.000000 + 2 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
115 chr1 hg19_ccdsGene exon 907668 907804 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
116 chr1 hg19_ccdsGene CDS 908241 908390 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
117 chr1 hg19_ccdsGene exon 908241 908390 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
118 chr1 hg19_ccdsGene CDS 908566 908706 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
119 chr1 hg19_ccdsGene exon 908566 908706 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
120 chr1 hg19_ccdsGene CDS 908880 909020 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
121 chr1 hg19_ccdsGene exon 908880 909020 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
122 chr1 hg19_ccdsGene CDS 909213 909431 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
123 chr1 hg19_ccdsGene exon 909213 909431 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
124 chr1 hg19_ccdsGene CDS 909696 909744 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
125 chr1 hg19_ccdsGene exon 909696 909744 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
126 chr1 hg19_ccdsGene CDS 909822 909952 0.000000 + 2 gene_id "CCDS4.1"; transcript_id "CCDS4.1";
127 chr1 hg19_ccdsGene stop_codon 909953 909955 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
128 chr1 hg19_ccdsGene exon 909822 909955 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";
129