Mercurial > repos > vimalkumarvelayudhan > riboplot
changeset 42:abab200b808b draft default tip
Uploaded
| author | vimalkumarvelayudhan |
|---|---|
| date | Fri, 24 Nov 2017 06:17:35 -0500 |
| parents | 45f5550a0aa3 |
| children | |
| files | riboplot.xml |
| diffstat | 1 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/riboplot.xml Fri Nov 24 06:17:14 2017 -0500 +++ b/riboplot.xml Fri Nov 24 06:17:35 2017 -0500 @@ -1,13 +1,13 @@ -<tool id="riboplot" name="riboplot" version="0.2.5"> +<tool id="riboplot" name="riboplot" version="0.3.1"> <description>Plot and output read counts for a single transcript in an alignment (BAM) </description> <requirements> - <requirement type="package" version="0.2.5">riboplot</requirement> - </requirements> + <requirement type="package" version="0.3.1">riboplot</requirement> + </requirements> <stdio> <exit_code range="1:" level="fatal" description="Error" /> </stdio> - <command>python \${RIBOPLOT_PATH}/riboplot + <command>riboplot --ribo_file "${ribo_file}" --transcriptome_fasta "${transcriptome_fasta}" --transcript_name "${transcript_name}" @@ -24,8 +24,8 @@ <param name="ribo_file" type="data" format="bam" label="Ribo-Seq alignment file in BAM format"/> <param name="transcriptome_fasta" type="data" format="fasta" label="FASTA format file of the transcriptome"/> <param name="transcript_name" type="text" label="Name of the transcript to plot (as in FASTA)" size="40"> - <validator type="expression" message="Please input a single transcript name">len(value.split(',')) == 1</validator> - <validator type="empty_field" message="Field requires a value"/> + <!-- <validator type="expression" message="Please input a single transcript name">len(value.split(',')) == 1</validator> + <validator type="empty_field" message="Field requires a value"/> --> <sanitizer> <valid> <add value="|"/>