# HG changeset patch
# User vimalkumarvelayudhan
# Date 1511522255 18000
# Node ID abab200b808bca02f877f2bd30b561e8bc1cfe64
# Parent  45f5550a0aa36da68e8db89a61e6ffa1bdfaf300
Uploaded

diff -r 45f5550a0aa3 -r abab200b808b riboplot.xml
--- a/riboplot.xml	Fri Nov 24 06:17:14 2017 -0500
+++ b/riboplot.xml	Fri Nov 24 06:17:35 2017 -0500
@@ -1,13 +1,13 @@
-<tool id="riboplot" name="riboplot" version="0.2.5">
+<tool id="riboplot" name="riboplot" version="0.3.1">
     <description>Plot and output read counts for a single transcript in an alignment (BAM)
     </description>
     <requirements>
-        <requirement type="package" version="0.2.5">riboplot</requirement>
-    </requirements>
+        <requirement type="package" version="0.3.1">riboplot</requirement>
+     </requirements>
     <stdio>
         <exit_code range="1:"  level="fatal" description="Error" />
     </stdio>
-    <command>python \${RIBOPLOT_PATH}/riboplot
+    <command>riboplot
     --ribo_file "${ribo_file}"
     --transcriptome_fasta "${transcriptome_fasta}"
     --transcript_name "${transcript_name}"
@@ -24,8 +24,8 @@
         <param name="ribo_file" type="data" format="bam" label="Ribo-Seq alignment file in BAM format"/>
         <param name="transcriptome_fasta" type="data" format="fasta" label="FASTA format file of the transcriptome"/>
         <param name="transcript_name" type="text" label="Name of the transcript to plot (as in FASTA)" size="40">
-            <validator type="expression" message="Please input a single transcript name">len(value.split(',')) == 1</validator>
-            <validator type="empty_field" message="Field requires a value"/>
+            <!-- <validator type="expression" message="Please input a single transcript name">len(value.split(',')) == 1</validator>
+            <validator type="empty_field" message="Field requires a value"/> -->
             <sanitizer>
                 <valid>
                     <add value="|"/>