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date Fri, 24 Nov 2017 06:17:14 -0500
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RiboPlot
========
RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).

There are two programs in the package:

**riboplot**

    Plot and output read counts (csv) for a single transcript.

**ribocount**

    Output read counts for all transcripts in an alignment.

Free software: GPL license

Documentation: http://pythonhosted.org/riboplot

Repository: https://github.com/vimalkvn/riboplot


.. note::

    RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_.
    This release of riboplot has been tested with bedtools version ``2.24.0``.

    If you have conda enabled on Galaxy, then all dependencies including bedtools
    will be installed automatically.

    Otherwise, on Ubuntu and derivatives, bedtools can be installed from the
    repositories using::

        sudo apt-get install bedtools