Mercurial > repos > vimalkumarvelayudhan > riboplot
view run_riboplot_sample.sh @ 6:2ffa8172dce1
Tests for valid RNA Seq bam and warnings when there are no RNA counts
author | Vimalkumar Velayudhan <vimal@biotechcoder.com> |
---|---|
date | Wed, 12 Aug 2015 16:28:43 +0100 |
parents | 8e1efafa6277 |
children |
line wrap: on
line source
#!/bin/bash python riboplot/riboplot.py -b tests/data/5hRPFsorted.bam \ -f tests/data/zebrafish.fna \ -t 'gi|148357119|ref|NM_001098396.1|' \ # -n tests/data/5hmRNAsorted.bam