diff tool_dependencies.xml @ 34:3c6ce517b9f2

Testing whl bundle install

--- a/tool_dependencies.xml	Fri Oct 16 16:15:05 2015 +0100
+++ b/tool_dependencies.xml	Tue Dec 01 21:05:55 2015 +0000
@@ -1,16 +1,34 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="riboplot" version="0.2.1">
+    <package name="riboplot" version="0.2.5">
         <install version="1.0">
+			<actions_group>
+            <actions os="linux" architecture="x86_64">
+                <action type="download_by_url">https://github.com/vimalkvn/riboplot/releases/download/0.2.5/riboplot-whl-bundle-0.2.5.tar.bz2</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+            </actions>
             <actions>
-                <action type="setup_virtualenv">riboplot==0.2.1</action>
+                <action type="setup_virtualenv">--no-index 
+				--find-links=$INSTALL_DIR
+				matplotlib<=1.4.3
+				pysam<=0.8.3
+				riboplot==0.2.5</action>
                 <action type="set_environment">
                     <environment_variable action="set_to" name="RIBOPLOT_PATH">$INSTALL_DIR/venv/bin</environment_variable>
                 </action>
             </actions>
+        </actions_group>
         </install>
         <readme>
-           Note: RNA coverage requires bedtools installed.
+            Please check README.rst
         </readme>
     </package>
+    <package name="bedtools" version="2.24">
+        <repository changeset_revision="39b86c1e267d" name="package_bedtools_2_24"
+            owner="iuc" prior_installation_required="True"
+            toolshed="https://toolshed.g2.bx.psu.edu/" />
+    </package>
 </tool_dependency>