Mercurial > repos > vimalkumarvelayudhan > riboplot
diff tool_dependencies.xml @ 34:3c6ce517b9f2
Testing whl bundle install
author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
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date | Tue, 01 Dec 2015 21:05:55 +0000 |
parents | 461285cb3b6a |
children | 34b33b5ae288 |
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--- a/tool_dependencies.xml Fri Oct 16 16:15:05 2015 +0100 +++ b/tool_dependencies.xml Tue Dec 01 21:05:55 2015 +0000 @@ -1,16 +1,34 @@ <?xml version="1.0"?> <tool_dependency> - <package name="riboplot" version="0.2.1"> + <package name="riboplot" version="0.2.5"> <install version="1.0"> + <actions_group> + <actions os="linux" architecture="x86_64"> + <action type="download_by_url">https://github.com/vimalkvn/riboplot/releases/download/0.2.5/riboplot-whl-bundle-0.2.5.tar.bz2</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> <actions> - <action type="setup_virtualenv">riboplot==0.2.1</action> + <action type="setup_virtualenv">--no-index + --find-links=$INSTALL_DIR + matplotlib<=1.4.3 + pysam<=0.8.3 + riboplot==0.2.5</action> <action type="set_environment"> <environment_variable action="set_to" name="RIBOPLOT_PATH">$INSTALL_DIR/venv/bin</environment_variable> </action> </actions> + </actions_group> </install> <readme> - Note: RNA coverage requires bedtools installed. + Please check README.rst </readme> </package> + <package name="bedtools" version="2.24"> + <repository changeset_revision="39b86c1e267d" name="package_bedtools_2_24" + owner="iuc" prior_installation_required="True" + toolshed="https://toolshed.g2.bx.psu.edu/" /> + </package> </tool_dependency>