| 3 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 1 .PHONY: clean-pyc clean-build docs clean | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 2 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 3 help: | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 4 	@echo "clean - remove all build, test, coverage and Python artifacts" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 5 	@echo "clean-build - remove build artifacts" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 6 	@echo "clean-pyc - remove Python file artifacts" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 7 	@echo "clean-test - remove test and coverage artifacts" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 8 	@echo "lint - check style with flake8" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 9 	@echo "test - run tests quickly with the default Python" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 10 	@echo "test-all - run tests on every Python version with tox" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 11 	@echo "coverage - check code coverage quickly with the default Python" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 12 	@echo "docs - generate Sphinx HTML documentation, including API docs" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 13 	@echo "release - package and upload a release" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 14 	@echo "dist - package" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 15 	@echo "install - install the package to the active Python's site-packages" | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 16 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 17 clean: clean-build clean-pyc clean-test | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 18 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 19 clean-build: | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 20 	rm -fr build/ | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 21 	rm -fr dist/ | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 22 	rm -fr .eggs/ | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 23 	find . -name '*.egg-info' -exec rm -fr {} + | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 24 	find . -name '*.egg' -exec rm -f {} + | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 25 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 26 clean-pyc: | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 27 	find . -name '*.pyc' -exec rm -f {} + | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 28 	find . -name '*.pyo' -exec rm -f {} + | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 29 	find . -name '*~' -exec rm -f {} + | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 30 	find . -name '__pycache__' -exec rm -fr {} + | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 31 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 32 clean-test: | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 33 	rm -fr .tox/ | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 34 	rm -f .coverage | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 35 	rm -fr htmlcov/ | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 36 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 37 lint: | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 38 	flake8 riboplot tests | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 39 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 40 test: | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 41 	python setup.py test | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 42 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 43 test-all: | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 44 	tox | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 45 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 46 coverage: | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 47 	coverage run --source riboplot setup.py test | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 48 	coverage report -m | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 49 	coverage html | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 50 	open htmlcov/index.html | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 51 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 52 docs: | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 53 	rm -f docs/riboplot.rst | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 54 	rm -f docs/modules.rst | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 55 	sphinx-apidoc -o docs/ riboplot | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 56 	$(MAKE) -C docs clean | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 57 	$(MAKE) -C docs html | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 58 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 59 release: clean | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 60 	python setup.py sdist upload | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 61 	python setup.py bdist_wheel upload | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 62 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 63 dist: clean | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 64 	python setup.py sdist | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 65 	python setup.py bdist_wheel | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 66 	ls -l dist | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 67 | 
| 
Vimalkumar Velayudhan <vimal@biotechcoder.com> parents: diff
changeset | 68 install: clean | 
| 7 
096c6bbf4a04
Bugfix: (ribocounts) Read length was sent as rnafile argument in check_optional_arguments
 Vimalkumar Velayudhan <vimal@biotechcoder.com>diff
changeset | 69 	python setup.py install |