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Tests for valid RNA Seq bam and warnings when there are no RNA counts
author Vimalkumar Velayudhan <vimal@biotechcoder.com>
date Wed, 12 Aug 2015 16:28:43 +0100
parents ca58e9466cbf
children 7571f5c89090
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1 <!DOCTYPE html>
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2 <html lang="en">
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3 <head>
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4
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5 <!-- Basic Page Needs
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6 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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7 <meta charset="utf-8">
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8 <title>Ribo-Seq profile counts</title>
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9 <meta name="description" content="">
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10 <meta name="author" content="">
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12 <!-- Mobile Specific Metas
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13 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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14 <meta name="viewport" content="width=device-width, initial-scale=1">
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16 <!-- FONT
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17 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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18 <!--<link href="http://fonts.googleapis.com/css?family=Open+Sans:400,300,600"-->
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19 <!--rel="stylesheet" type="text/css">-->
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21 <!-- CSS
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22 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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23 <link rel="stylesheet" href="css/normalize.css">
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24 <link rel="stylesheet" href="css/skeleton.css">
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25 <link rel="stylesheet" href="css/custom.css">
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27 <!-- Favicon
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28 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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29 <link rel="icon" type="image/png" href="images/favicon.png">
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31 </head>
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32 <body>
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34 <!-- Primary Page Layout
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35 –––––––––––––––––––––––––––––––––––––––––––––––––– -->
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36 <div class="container">
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37 <div class="row">
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38 <div class="twelve columns">
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39 <h3 id="page-title">Ribo-Seq profile counts for all transcripts</h3>
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40 <h5>Total transcript(s) <span class="info">{count}</span>, Footprint
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41 length <span class="info">{length}</span></h5>
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42 <div id="overlay">Sorting this large table...</div>
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43 <table id="counts-table" class="tablesorter u-full-width">
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44 <thead>
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45 <tr>
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46 <th>Number</th>
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47 <th>Transcript name</th>
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48 <th>Total reads</th>
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49 <th>Counts (csv file)</th>
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50 </tr>
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51 </thead>
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52 <tbody>
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53 {table_content}
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54 </tbody>
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55 </table>
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56 <p class="text-muted">Time taken for generating counts (H:MM:SS): {duration}</p>
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57 </div>
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58 </div>
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59 </div>
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60 <script type="text/javascript" src="js/jquery-1.11.3.min.js"></script>
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61 <script type="text/javascript" src="js/jquery.tablesorter.min.js"></script>
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62 <script type="text/javascript" src="js/custom.js"></script>
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63 </body>
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64 </html>