Mercurial > repos > veg > bioext_bealign

changeset 1:787baac95405 draft default tip

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planemo upload for repository https://github.com/davebx/bioext-gx/ commit b'1e1a1e37fa621df190621f5c95c00fb9d31d9a60\n'-dirty
author veg
date Thu, 08 Mar 2018 13:06:02 -0500
parents c6f0b318bc03
children
files bealign.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bealign.xml	Thu Feb 22 15:48:40 2018 -0500
+++ b/bealign.xml	Thu Mar 08 13:06:02 2018 -0500
@@ -8,7 +8,7 @@
     <version_command>bealign --version</version_command>
     <command detect_errors="exit_code">
     <![CDATA[
-    bealign --reference $reference $advanced.expected_identity --alphabet $advanced.alphabet
+    bealign --reference '$select_reference.reference' $advanced.expected_identity --alphabet $advanced.alphabet
         --score-matrix $advanced.score_matrix $advanced.reverse_complement $advanced.keep_reference
         #if $advanced.discard:
             $advanced.discard $advanced.discarded_reads