Mercurial > repos > veg > bioext_bealign

comparison bealign.xml @ 1:787baac95405 draft default tip

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planemo upload for repository https://github.com/davebx/bioext-gx/ commit b'1e1a1e37fa621df190621f5c95c00fb9d31d9a60\n'-dirty
author veg
date Thu, 08 Mar 2018 13:06:02 -0500
parents c6f0b318bc03
children
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0:c6f0b318bc03 1:787baac95405
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <version_command>bealign --version</version_command> 8 <version_command>bealign --version</version_command>
9 <command detect_errors="exit_code"> 9 <command detect_errors="exit_code">
10 <![CDATA[ 10 <![CDATA[
11 bealign --reference $reference $advanced.expected_identity --alphabet $advanced.alphabet 11 bealign --reference '$select_reference.reference' $advanced.expected_identity --alphabet $advanced.alphabet
12 --score-matrix $advanced.score_matrix $advanced.reverse_complement $advanced.keep_reference 12 --score-matrix $advanced.score_matrix $advanced.reverse_complement $advanced.keep_reference
13 #if $advanced.discard: 13 #if $advanced.discard:
14 $advanced.discard $advanced.discarded_reads 14 $advanced.discard $advanced.discarded_reads
15 #end if 15 #end if
16 $input $output 16 $input $output