Mercurial > repos > ulfschaefer > phephenix
comparison vcfs2fasta.sh @ 4:e16ab38d4e67 draft
Uploaded
| author | ulfschaefer |
|---|---|
| date | Fri, 22 Apr 2016 08:28:09 -0400 |
| parents | 45ff0fc972e8 |
| children |
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| 3:1368dc1867f7 | 4:e16ab38d4e67 |
|---|---|
| 16 shift | 16 shift |
| 17 EXCLUDE=$1 | 17 EXCLUDE=$1 |
| 18 shift | 18 shift |
| 19 INPUT=$@ | 19 INPUT=$@ |
| 20 | 20 |
| 21 CMD="phenix.py vcfs2fasta --out $OUTPUT --input $INPUT" | 21 CMD="phenix.py vcf2fasta --out $OUTPUT --input $INPUT" |
| 22 | 22 |
| 23 if [ $WITHMIXTURES != "NOTTHERE" ]; then | 23 if [ $WITHMIXTURES != "NOTTHERE" ]; then |
| 24 CMD="$CMD --with-mixtures $WITHMIXTURES" | 24 CMD="$CMD --with-mixtures $WITHMIXTURES" |
| 25 fi | 25 fi |
| 26 | 26 |