# HG changeset patch
# User ulfschaefer
# Date 1449140616 18000
# Node ID a60184379a0f2350317455d52a0ca785abc33447
# Parent 505a9f1dd8e07c055fd010c0b4e3def2fa89b162
Deleted selected files
diff -r 505a9f1dd8e0 -r a60184379a0f filter_vcf.xml
--- a/filter_vcf.xml Thu Dec 03 05:41:12 2015 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,99 +0,0 @@
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- filters a VCF file
-
- python
- pyvcf
- pyyaml
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- filter_vcf.sh
- $output
- $input
- #for $sf in $snp_filter:
- #for $name, $param in $sf.snp_filter_type.iteritems():
- #if $name not in [ "__current_case__", "snp_filter_type_selector" ]:
- ${name}:"${param}"
- #end if
- #end for
- #end for
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-usage: filter_vcf.py [-h] \-\-vcf VCF \-\-filters FILTERS \-\-output OUTPUT
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-optional arguments:
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--h, \-\-help show this help message and exit
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-\-\-vcf VCF, -v VCF VCF file to (re)filter.
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-\-\-filters FILTERS, -f FILTERS Filter(s) to apply as key:threshold pairs, separated by comma.
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-\-\-output OUTPUT, -o OUTPUT Location for filtered VCF to be written.
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diff -r 505a9f1dd8e0 -r a60184379a0f tool_dependencies.xml
--- a/tool_dependencies.xml Thu Dec 03 05:41:12 2015 -0500
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,12 +0,0 @@
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