diff data_manager_conf.xml @ 0:c01ac945b067 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Mon Jul 11 05:23:33 2016 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<data_managers>
+    <data_manager tool_file="data_manager/fetch_mlst_data.xml" id="fetch_mlst_data" version="1.0.0"><!-- Defines a single Data Manager Tool that can update one or more Data Tables -->
+        <data_table name="mlst_data"> <!-- Defines a Data Table to be modified. -->
+            <output> <!-- Handle the output of the Data Manager Tool -->
+                <column name="value" />
+                <column name="dbkey" />
+                <column name="name" />
+                <column name="time_stamp" />
+                <column name="file_path" output_ref="out_file" >  <!-- The value of this column will be modified based upon data in "out_file". example value "phiX.fa" -->
+                    <move type="directory"> <!-- Moving a file from the extra files path of "out_file" -->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mlst_data</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mlst_data/${dbkey}/${time_stamp}</value_translation> <!-- Store this value in the final Data Table -->
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+        <!-- additional data_tables can be configured from a single Data Manager -->
+    </data_manager>
+</data_managers>