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Adding profile info and exit code behavior. Making version numbers consistent. Upping test number.
author trinity_ctat
date Fri, 06 Oct 2017 10:56:47 -0400
parents 7824ba3f1dfc
children
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2:7824ba3f1dfc 3:962f40c5958c
1 <tool id="trinityrnaseq" name="trinity" version="1.0.0"> 1 <tool id="trinityrnaseq" name="trinity" version="1.0.0" profile="17.05">
2 2
3 <!-- Original tool written by Jeremy Goecks, 3 <!-- Original tool written by Jeremy Goecks,
4 later development/maintenance by (in chronological order) 4 later development/maintenance by (in chronological order)
5 Brian Haas, Ben Fulton, Cicada Dennis 5 Brian Haas, Ben Fulton, Cicada Dennis
6 --> 6 -->
10 <requirement type="package">subprocess32</requirement> 10 <requirement type="package">subprocess32</requirement>
11 <requirement type="package">samtools</requirement> 11 <requirement type="package">samtools</requirement>
12 <requirement type="package">bzip2</requirement> 12 <requirement type="package">bzip2</requirement>
13 <requirement type="package" version="2.4.0">trinity</requirement> 13 <requirement type="package" version="2.4.0">trinity</requirement>
14 </requirements> 14 </requirements>
15 <command> 15 <command detect_errors="default">
16 <![CDATA[ 16 <![CDATA[
17 python $__tool_directory__/trinity_wrapper.py 17 python $__tool_directory__/trinity_wrapper.py
18 --CPU \${GALAXY_SLOTS:-4} 18 --CPU \${GALAXY_SLOTS:-4}
19 --max_memory \${TRINITY_MAX_MEMORY:-31G} 19 --max_memory \${TRINITY_MAX_MEMORY:-31G}
20 #if str($inputs.paired_or_single) == "paired": 20 #if str($inputs.paired_or_single) == "paired":