Mercurial > repos > trinity_ctat > star_fusion
comparison star_fusion.xml @ 9:a53fe0b09d21 draft
Fixing star_fusion tool.
| author | trinity_ctat |
|---|---|
| date | Fri, 15 Dec 2017 16:05:16 -0500 |
| parents | 5693287449b3 |
| children | 43d9d711800a |
comparison
equal
deleted
inserted
replaced
| 8:5693287449b3 | 9:a53fe0b09d21 |
|---|---|
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="default"> | 6 <command detect_errors="default"> |
| 7 <![CDATA[ | 7 <![CDATA[ |
| 8 STAR-Fusion | 8 STAR-Fusion |
| 9 --genome_lib_dir "${genome_ref_lib.fields.path}" | 9 --genome_lib_dir "${genome_ref_lib.fields.path}" |
| 10 --left_fq "${left_input} | 10 --left_fq "${left_input}" |
| 11 --right_fq "${right_input} | 11 --right_fq "${right_input}" |
| 12 --output_dir subdir | 12 --output_dir subdir |
| 13 ]]> | 13 ]]> |
| 14 </command> | 14 </command> |
| 15 <stdio> | 15 <stdio> |
| 16 <exit_code range="1:" level="fatal" description="Error returned from pipeline" /> | 16 <exit_code range="1:" level="fatal" description="Error returned from pipeline" /> |