Mercurial > repos > trinity_ctat > edger_differential_expression
comparison EdgeR_differentialExpression.xml @ 1:3fbe1523e1f0 draft
Adding EdgeR differential expression.
| author | trinity_ctat |
|---|---|
| date | Fri, 29 Sep 2017 14:06:18 -0400 |
| parents | 023628c034b6 |
| children | 93f07220f08c |
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| 0:023628c034b6 | 1:3fbe1523e1f0 |
|---|---|
| 18 <param type="data" format="fasta" name="transcripts_fasta_file" label="Transcripts fasta file corresponding to matrix" /> | 18 <param type="data" format="fasta" name="transcripts_fasta_file" label="Transcripts fasta file corresponding to matrix" /> |
| 19 <param type="float" name="dispersion" value="0.1" min="0" label="dispersion value" help="Dispersion value to be used in the negative binomial" /> | 19 <param type="float" name="dispersion" value="0.1" min="0" label="dispersion value" help="Dispersion value to be used in the negative binomial" /> |
| 20 | 20 |
| 21 </inputs> | 21 </inputs> |
| 22 <outputs> | 22 <outputs> |
| 23 | 23 <!-- |
| 24 <data format="tar.gz" name="EdgeR_Archive" label="${tool.name} on ${on_string}: EdgeR_Results.tar.gz" from_work_dir="edgeR_results.tar.gz" /> | 24 <data format="tar.gz" name="EdgeR_Archive" label="${tool.name} on ${on_string}: EdgeR_Results.tar.gz" from_work_dir="edgeR_results.tar.gz" /> |
| 25 --> | |
| 26 <data format="gz" name="EdgeR_Archive" label="${tool.name} on ${on_string}: EdgeR_Results.tar.gz" from_work_dir="edgeR_results.tar.gz" /> | |
| 25 | 27 |
| 26 </outputs> | 28 </outputs> |
| 27 <tests> | 29 <tests> |
| 28 <test> | 30 <test> |
| 29 <param name="counts_matrix" value="Sp.counts.matrix" /> | 31 <param name="counts_matrix" value="Sp.counts.matrix" /> |