# HG changeset patch
# User trinity_ctat
# Date 1523543188 14400
# Node ID cfb4fc1e820d6202b703bdf59d8cfca823643af1
Revamp and renaming of previous tools. Many of tools are new versions. Adding ctat_metagenomics tool.
diff -r 000000000000 -r cfb4fc1e820d ctat_metagenomics.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/ctat_metagenomics.xml Thu Apr 12 10:26:28 2018 -0400
@@ -0,0 +1,145 @@
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+ Centrifuge - Classifier for metagenomic sequences (RNA-Seq)
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+ ctat-metagenomics
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+.. class:: infomark
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+**Centrifuge is a novel microbial classification engine that enables rapid, accurate, and sensitive labeling of reads and quantification of species**
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+For more information:
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+https://ccb.jhu.edu/software/centrifuge/manual.shtml#what-is-centrifuge
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+The publication documenting Centrifuge can be found here:
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+http://genome.cshlp.org/content/early/2016/11/16/gr.210641.116.abstract
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diff -r 000000000000 -r cfb4fc1e820d tool-data/ctat_centrifuge_indexes.loc.sample
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/ctat_centrifuge_indexes.loc.sample Thu Apr 12 10:26:28 2018 -0400
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+# This file lists the locations of CTAT Centrifuge Indexes
+# Usually there will only be one index, but it is concievable
+# that there could be multiple indexes.
+# This file format is as follows
+# (white space characters are TAB characters):
+#
+#
+# value is a unique id
+# name is the display name
+# path is the directory where the index files are stored
+#
+#ctat_centrifuge_indexes.loc could look like:
+#
+#p_compressed+h+v CTAT_CentrifugeIndex_p_compressed+h+v /ctat/centrifuge/index/path/p_compressed+h+v
+#
diff -r 000000000000 -r cfb4fc1e820d tool_data_table_conf.xml.sample
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample Thu Apr 12 10:26:28 2018 -0400
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