# HG changeset patch
# User trinity_ctat
# Date 1525195978 14400
# Node ID d5f99ab85747bf9989018d9719a89b1faa5e233e
# Parent  e16ace74e516d7552c45119667536f70fbe86581
Uploaded

diff -r e16ace74e516 -r d5f99ab85747 data_manager/add_ctat_resource_lib.xml
--- a/data_manager/add_ctat_resource_lib.xml	Tue May 01 12:52:50 2018 -0400
+++ b/data_manager/add_ctat_resource_lib.xml	Tue May 01 13:32:58 2018 -0400
@@ -21,14 +21,14 @@
             --output_filename "${out_file}" 
             #if str( $download_question.download ) == "true":
                 --source_url "\"${download_question.source_url}\"" 
-                #if str( ${download_question.force_download} ) == "true":
+                #if str( $download_question.force_download ) == "true":
                     --force_download
                 #end if
             #end if
-            #if str( ${rebuild} ) == "true":
+            #if str( $rebuild ) == "true":
                 --build 
             #end if
-            #if str( ${gmap_build} ) == "true":
+            #if str( $gmap_build ) == "true":
                 --gmap_build 
             #end if
         ]]>
@@ -100,9 +100,16 @@
         When download is true, the files at https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/
         are used as selectors for the user to choose among.
         Specify the Full Path of the location where the CTAT Resource Library should be placed.
-        You will need approximately 60GB of space for this library.
+        You will need approximately 62GB of space for this library.
+        The installation of this tool takes some time, due to building a conda environment for the dependencies.
+        The download extracts the files during the download. The "source_data" files download faster, but then must be built.
+        Building the library from the "source_data" files can take many hours, depending on the resources of your machine.
+        The "plug-n-play" can take considerable time to download, depending on your internet connection. Even with high speed,
+        it is about 25GB that is transfered, so plan accordingly.
+        Neither the "source_data" nor the "plug-n-play" versions have had their gmap index built. If you are not going to be
+        using gmap_fusion, then you can uncheck the gmap-build check box and save the space and time building the index consumes.
         If you already have the library, specify the full path of the location where it exists and leave the download box unchecked.
-        The Reference Genome name may be left empty if downloading. The name will be used as the selector text of the entry in the data table.
+        The Reference Genome name may be left empty if downloading. The filename will then be used as the selector text of the entry in the data table.
         For more information on CTAT Genome Resource Libraries, see <a http="https://github.com/FusionFilter/FusionFilter/wiki">FusionFilter</a>
     </help>
     <code file="add_ctat_resource_lib.py" />