# HG changeset patch
# User trinity_ctat
# Date 1539983035 14400
# Node ID 80b2b02e23d1fd54589bbd107fcc28ef0407432c
# Parent  57428396c6e4c93726b3ae159ae791414e031b8b
Removed gmap and mutation code to debug tool error.

diff -r 57428396c6e4 -r 80b2b02e23d1 data_manager/add_ctat_resource_lib.xml
--- a/data_manager/add_ctat_resource_lib.xml	Fri Oct 19 16:04:19 2018 -0400
+++ b/data_manager/add_ctat_resource_lib.xml	Fri Oct 19 17:03:55 2018 -0400
@@ -38,25 +38,6 @@
                   --build_location="${genome_resource_library.specify_build_location.different_build_location}"
               #end if
             #end if
-            #if str($genome_resource_library.build_type) == "specify_built_location":
-              --build_location="${genome_resource_library.built_library_location}"
-            #end if
-            #if str($gmap_options.gmap_build) == "true":
-              --gmap_build 
-              #if str($gmap_options.force_gmap_build) == "true":
-                  --force_gmap_build
-              #end if
-            #end if
-            #if str($mutation_lib_options.mutation_build) == "true":
-              --download_mutation_resources_url="${mutation_lib_options.source_url}" 
-              --cosmic_resources_location="${mutation_lib_options.cosmic_files_location}"
-              #if str($mutation_lib_options.force_download) == "true":
-                  --new_mutation_download
-              #end if
-              #if str($mutation_lib_options.redo_integration) == "true":
-                  --new_mutation_integration
-              #end if
-            #end if
         ]]>
     </command>
     <inputs>