# HG changeset patch
# User trinity_ctat
# Date 1540569335 14400
# Node ID 44a99b1d39f52869b8494770514e1837877de36e
# Parent  c47ac2deaaf8283b9c29e07cfe87ab53b20c83f7
Adjusting default library in list.

diff -r c47ac2deaaf8 -r 44a99b1d39f5 data_manager/add_ctat_resource_lib.py
--- a/data_manager/add_ctat_resource_lib.py	Fri Oct 26 11:17:43 2018 -0400
+++ b/data_manager/add_ctat_resource_lib.py	Fri Oct 26 11:55:35 2018 -0400
@@ -132,6 +132,7 @@
     # If we can't get the list, send a default list.
 
     build_default_list = False
+    default_url_filename = "GRCh38_v27_CTAT_lib_Feb092018.plug-n-play.tar.gz"
     resource = urllib2.urlopen(_CTAT_ResourceLib_URL)
     if resource is None:
         build_default_list = True
@@ -158,6 +159,9 @@
     # Item two is the value that is put into the parameter associated with the option list.
     # Item three is a True or False value, indicating whether the item is selected.
     options = []
+    found_default_url = False
+    if len([item for item in urls_to_return if default_url_filename in item]) > 0:
+        found_default_url = True
     for i, url in enumerate(filelist_parser.urls):
         # The urls should look like: 
         # https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/GRCh37_v19_CTAT_lib_Feb092018.plug-n-play.tar.gz
@@ -173,12 +177,11 @@
             # Assume the path is relative to the page location.
             full_url_path = os.path.join(_CTAT_ResourceLib_URL, url)
         filename = os.path.basename(url)
-        # if filename.split("_")[0] != _CTAT_MouseGenome_Prefix:
-        #     # Don't put in the mouse genome options for now.
-        #     # The mouse genome option is not handled correctly yet
-        #     options.append((filename, full_url_path, i == 0))
-        # Mouse genomes should work now (we hope) - FIX - still not tested.
-        options.append((filename, full_url_path, i == 0))
+        if (found_default_url and (filename == default_url_filename)) or ((not found_default_url) and (i == 0)):
+            # This should be the default option chosen.
+            options.append((filename, full_url_path, True))
+        else:
+            options.append((filename, full_url_path, False))
     options.sort() # So the list will be in alphabetical order.
     # return a tuple of the urls
     print "The list being returned as options is:"