view data_manager_conf.xml @ 52:0e3e4f24e300 draft

Adding ctat_cravat_tissues table.

<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/add_ctat_resource_lib.xml" id="ctat_genome_resource_libs_data_manager"> 
        <data_table name="ctat_genome_resource_libs">
            <output>
                <column name="value" />
                    <!-- value is used to uniquely identify this entry in the table.
                    -->
                <column name="name" />
                    <!-- name is used as the selector in the pull down lists for items in this table.
                    -->
                <column name="path" />
                    <!-- path is the absolute path of the top level directory of the CTAT Genome Resource Library.
                    -->
                <!-- <column name="path" output_ref="out_file"> -->
                    <!-- It is typical to move the data file, but because our tool gets the destination
                    location from the user, we do not want to move the data from that location.
                    The full path of the CTAT Resource library is returned in location. 
                    So no need to change the value either.
                    The files are so big we do not want to be making copies of them.
                    They are created where we want them.
                    -->
                    <!-- <move type="file" relativize_symlinks="False"> -->
                        <!--<source>${path}</source> -->
                        <!--<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ctat_genome_lib_build_dir</target> -->
                    <!--</move> -->
                    <!--
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/ctat_genome_lib_build_dir
                    </value_translation>
                    -->
                    <!-- The location returned by the tool should already be an absolute path.
                    <value_translation type="function">abspath</value_translation>
                    -->
                <!--</column> -->
            </output>
        </data_table>
        <data_table name="ctat_cravat_tissues">
            <output>
                <column name="value" />
                    <!-- value is used to uniquely identify this entry in the table.
                    -->
                <column name="name" />
                    <!-- name is used as the selector in the pull down lists for items in this table.
                    -->
                <column name="code" />
                    <!-- .
                    -->
                <column name="date" />
                    <!-- .
                    -->
            </output>
        </data_table>
    </data_manager>
</data_managers>