Mercurial > repos > trinity_ctat > ctat_genome_ref_lib_data_manager_test2

comparison data_manager/add_ctat_ref_lib.xml @ 11:1d8ffed7a312 draft

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author trinity_ctat
date Tue, 12 Dec 2017 15:42:14 -0500
parents acff55f2d70a
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10:acff55f2d70a 11:1d8ffed7a312
8 </requirements> 8 </requirements>
9 <command detect_errors="default"> 9 <command detect_errors="default">
10 <![CDATA[ 10 <![CDATA[
11 echo "Current directory and contents" && pwd && ls -la . && 11 echo "Current directory and contents" && pwd && ls -la . &&
12 echo "Tool directory and contents are" && echo "$__tool_directory__" && ls -la "$__tool_directory__" && 12 echo "Tool directory and contents are" && echo "$__tool_directory__" && ls -la "$__tool_directory__" &&
13 python add_ctat_ref_lib.py ${download} 13 python $__tool_directory__/add_ctat_ref_lib.py ${download}
14 --ref_genome "${genome_name}" 14 --ref_genome "${genome_name}"
15 --destination_path "${destination}" 15 --destination_path "${destination}"
16 -o "${out_file}" 16 -o "${out_file}"
17 ]]> 17 ]]>
18 </command> 18 </command>