Mercurial > repos > trinity_ctat > ctat_edger_differential_expression
comparison ctat_edger_differential_expression.xml @ 1:57907c40385c draft default tip
Updating tools requirements.
| author | trinity_ctat |
|---|---|
| date | Wed, 27 Jun 2018 14:12:38 -0400 |
| parents | f77032cd0463 |
| children |
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| 0:f77032cd0463 | 1:57907c40385c |
|---|---|
| 2 | 2 |
| 3 <description>Identify Differentially Expressed Transcripts Using EdgeR</description> | 3 <description>Identify Differentially Expressed Transcripts Using EdgeR</description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="2.7">python</requirement> | 5 <requirement type="package" version="2.7">python</requirement> |
| 6 <requirement type="package">subprocess32</requirement> | 6 <requirement type="package">subprocess32</requirement> |
| 7 <requirement type="package">samtools</requirement> | |
| 8 <requirement type="package">bzip2</requirement> | 7 <requirement type="package">bzip2</requirement> |
| 9 <requirement type="package" version="1.3.0">rsem</requirement> | 8 <requirement type="package" version="1.3.0">rsem</requirement> |
| 10 <requirement type="package" version="3">bioconductor-edger</requirement> | 9 <requirement type="package" version="3">bioconductor-edger</requirement> |
| 11 <requirement type="package" version="2">bioconductor-qvalue</requirement> | 10 <requirement type="package" version="2">bioconductor-qvalue</requirement> |
| 12 <requirement type="package" version="2.5.1">trinity</requirement> | 11 <requirement type="package" version="2.6.6">trinity</requirement> |
| 13 </requirements> | 12 </requirements> |
| 14 <command detect_errors="exit_code"> | 13 <command detect_errors="exit_code"> |
| 15 <![CDATA[ | 14 <![CDATA[ |
| 16 python $__tool_directory__/ctat_edger_differential_expression.py | 15 python $__tool_directory__/ctat_edger_differential_expression.py |
| 17 $counts_matrix | 16 $counts_matrix |