changeset 3:4fa8238660cc draft default tip

Uploaded

--- a/data_manager/add_ctat_centrifuge_index.py	Mon Apr 30 08:46:43 2018 -0400
+++ b/data_manager/add_ctat_centrifuge_index.py	Tue May 01 09:58:58 2018 -0400
@@ -63,38 +63,36 @@
 # End of class FileListParser
 
 def get_ctat_centrifuge_index_locations():
+    # For dynamic options need to return an interable with contents that are tuples with 3 items.
+    # Item one is a string that is the display name put into the option list.
+    # Item two is the value that is put into the parameter associated with the option list.
+    # Item three is a True or False value, indicating whether the item is selected.
+    options = []
     # open the url and retrieve the filenames of the files in the directory.
     resource = urllib2.urlopen(_CTAT_CentrifugeIndexPage_URL)
     theHTML = resource.read()
     filelist_parser = FileListParser()
     filelist_parser.feed(theHTML)
-    # return a tuple of the filenames
-    # return tuple(filelist_parser.filenames)
-    # For now, I am printing the list, just so I can see what was returned, 
     # This is what was returned on 2018-04-23
     # ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed_2018_4_15.tar.gz
     # ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/nt_2018_3_3.tar.gz
     # ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed+h+v.tar.gz
     # ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p+h+v.tar.gz
+    # Which could be hard coded:
+    # options.append(("p_compressed+h+v", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed+h+v.tar.gz", True))
+    # options.append(("p+h+v", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p+h+v.tar.gz", False))
+    # options.append(("nt_2018_3_3", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/nt_2018_3_3.tar.gz", False))
+    # options.append(("p_compressed_2018_4_15", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed_2018_4_15.tar.gz", False))
     # but only returning the one we want, which for now is assumed to be present.
+    # For now, I am printing the list, just so I can see what was returned, 
     print "FYI: The URL's that were found on Centrifuge's page are:"
     print "\t" + "\n\t".join(filelist_parser.filenames)
-    # Instead of sending back the list of found URL's, send back the one URL we want.
-    # vals.add(_CTAT_CentrifugeDownload_URL) 
-    # FIX - we have been unable to figure out what the format is that we need to send back.
-    # I have tried various things. It seems to need something two layered, that is,
-    # a tuple or a dict of something that can be sequenced over using next. 
-    # return tuple(filelist_parser.filenames) # this is what I originally had, but it doesn't work.
-    # return ("one","two") # only prints 'o' and 't'.
-    #vals=set()
-    #vals.add("one")
-    #vals.add("two")
-    # vals = ("one", "onemore", "/path/to/one")
-    vals = [dict(name="one", value="onemore", path="/path/to/one")]
+    # For now instead of sending back the list of found URL's, send back the one URL we want.
+    # Currently, only one of the options is supported.
+    options.append((_CTAT_CentrifugeDir_Name, _CTAT_CentrifugeDownload_URL, True))
     print "The items in vals are:"
-    print str(vals)
-    return vals # works kind of, but nothing is printed in the pull down list.
-    # return tuple(vals)
+    print str(options)
+    return options 
 
 # The following was used by the example program to get input parameters through the json.
 # Just leaving here for reference.

--- a/data_manager/add_ctat_centrifuge_index.xml	Mon Apr 30 08:46:43 2018 -0400
+++ b/data_manager/add_ctat_centrifuge_index.xml	Tue May 01 09:58:58 2018 -0400
@@ -43,13 +43,18 @@
                      However, I have not been able to figure out how to send information back correctly
                      from the function and there is no documentation that I have found showing how to do it.
                 <param name="filename" type="select" label="Select File" display="radio" 
-                    dynamic_options="get_ctat_centrifuge_index_locations()" help="Select a Centrifuge Index to Download." />
-                -->
+                    dynamic_options="get_ctat_centrifuge_index_locations()" 
+                    help="Select a Centrifuge Index to Download." />
+                Hard coded version.
                 <param name="filename" type="text" value="ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed+h+v.tar.gz">
                     <option value="ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed+h+v.tar.gz">
                         p_compressed+h+v
                     </option>
                 </param>
+                -->
+                <param name="filename" type="select" label="Select File"
+                    dynamic_options="get_ctat_centrifuge_index_locations()" 
+                    help="Select a Centrifuge Index to Download." />
                 <param name="force_download" type="boolean" checked="false" label="Force New Download?" />
             </when>
         </conditional>