Mercurial > repos > trinity_ctat > ctat_analyze_differential_expression

comparison ctat_analyze_differential_expression.py @ 5:57bdc1772c5b draft default tip

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author trinity_ctat
date Mon, 02 Jul 2018 11:22:20 -0400
parents 03155bc11cff
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4:b37d57c8ce7e 5:57bdc1772c5b
106 106
107 origMatrixName= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix" 107 origMatrixName= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix"
108 # diffExpr.P0.001_C2.0.matrix 108 # diffExpr.P0.001_C2.0.matrix
109 run_command("mv " + origMatrixName + " diffExpr.matrix") 109 run_command("mv " + origMatrixName + " diffExpr.matrix")
110 110
111 SampleCorName= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.sample_cor.dat" 111 SampleCorName= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.centered.sample_cor.dat"
112 # diffExpr.P0.001_C2.0.matrix.log2.sample_cor.dat 112 # diffExpr.P0.001_C2.0.matrix.log2.sample_cor.dat
113 run_command("mv " + SampleCorName + " diffExpr.matrix.log2.sample_cor.dat") 113 run_command("mv " + SampleCorName + " diffExpr.matrix.log2..sample_cor.dat")
114 114
115 CorMatrix= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.sample_cor_matrix.pdf" 115 CorMatrix= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.centered.sample_cor_matrix.pdf"
116 # diffExpr.P0.001_C2.0.matrix.log2.sample_cor_matrix.pdf 116 # diffExpr.P0.001_C2.0.matrix.log2.sample_cor_matrix.pdf
117 run_command("mv " + CorMatrix + " diffExpr.matrix.log2.sample_cor_matrix.pdf") 117 run_command("mv " + CorMatrix + " diffExpr.matrix.log2.sample_cor_matrix.pdf")
118 118
119 Heatmap= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.centered.genes_vs_samples_heatmap.pdf" 119 Heatmap= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.centered.genes_vs_samples_heatmap.pdf"
120 #diffExpr.P0.001_C2.0.matrix.log2.centered.genes_vs_samples_heatmap.pdf 120 #diffExpr.P0.001_C2.0.matrix.log2.centered.genes_vs_samples_heatmap.pdf