Mercurial > repos > trinity_ctat > ctat_analyze_differential_expression
comparison ctat_analyze_differential_expression.py @ 5:57bdc1772c5b draft default tip
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author | trinity_ctat |
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date | Mon, 02 Jul 2018 11:22:20 -0400 |
parents | 03155bc11cff |
children |
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4:b37d57c8ce7e | 5:57bdc1772c5b |
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106 | 106 |
107 origMatrixName= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix" | 107 origMatrixName= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix" |
108 # diffExpr.P0.001_C2.0.matrix | 108 # diffExpr.P0.001_C2.0.matrix |
109 run_command("mv " + origMatrixName + " diffExpr.matrix") | 109 run_command("mv " + origMatrixName + " diffExpr.matrix") |
110 | 110 |
111 SampleCorName= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.sample_cor.dat" | 111 SampleCorName= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.centered.sample_cor.dat" |
112 # diffExpr.P0.001_C2.0.matrix.log2.sample_cor.dat | 112 # diffExpr.P0.001_C2.0.matrix.log2.sample_cor.dat |
113 run_command("mv " + SampleCorName + " diffExpr.matrix.log2.sample_cor.dat") | 113 run_command("mv " + SampleCorName + " diffExpr.matrix.log2..sample_cor.dat") |
114 | 114 |
115 CorMatrix= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.sample_cor_matrix.pdf" | 115 CorMatrix= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.centered.sample_cor_matrix.pdf" |
116 # diffExpr.P0.001_C2.0.matrix.log2.sample_cor_matrix.pdf | 116 # diffExpr.P0.001_C2.0.matrix.log2.sample_cor_matrix.pdf |
117 run_command("mv " + CorMatrix + " diffExpr.matrix.log2.sample_cor_matrix.pdf") | 117 run_command("mv " + CorMatrix + " diffExpr.matrix.log2.sample_cor_matrix.pdf") |
118 | 118 |
119 Heatmap= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.centered.genes_vs_samples_heatmap.pdf" | 119 Heatmap= "diffExpr.P" + Pvalue + "_" + "C" + Cvalue + ".matrix.log2.centered.genes_vs_samples_heatmap.pdf" |
120 #diffExpr.P0.001_C2.0.matrix.log2.centered.genes_vs_samples_heatmap.pdf | 120 #diffExpr.P0.001_C2.0.matrix.log2.centered.genes_vs_samples_heatmap.pdf |