Mercurial > repos > trinity_ctat > analyze_differential_expression

comparison analyze_diff_exp.xml @ 6:9b2226f8c2fe draft

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Adding rsem dependencies to other tools.
author trinity_ctat
date Mon, 02 Oct 2017 14:59:59 -0400
parents 54f173578868
children f51625f25d56
comparison
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5:dab3b085f23d 6:9b2226f8c2fe
1 <tool id="Analyze_Diff_Exp" name="Analyze_Differential_Expression" version="0.0.1"> 1 <tool id="Analyze_Diff_Exp" name="Analyze_Differential_Expression" version="0.0.1">
2 2
3 <description>Analyze differential expression</description> 3 <description>Analyze differential expression</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.7">python</requirement> 5 <requirement type="package" version="2.7">python</requirement>
6 <requirement type="package" version="1.3.0">rsem</requirement>
6 <requirement type="package">trinity</requirement> 7 <requirement type="package">trinity</requirement>
7 </requirements> 8 </requirements>
8 <command> 9 <command>
9 <![CDATA[ 10 <![CDATA[
10 python $__tool_directory__/analyze_diff_exp_wrapper.py $EdgeRTarGz $TMM_Matrix_FPKM $Pvalue $Cvalue 11 python $__tool_directory__/analyze_diff_exp_wrapper.py $EdgeRTarGz $TMM_Matrix_FPKM $Pvalue $Cvalue