comparison trinityToolWrapper.py @ 8:28f6d3b8e931 draft

Adjusting requirements.

7:78d12a725443

    # I tried using "command -v Trinity" but for some reason, I was getting a OS permission error with that.
    # I just found distutils.spawn.find_executable() which might work, but already implemented the below.
    try:
        pipe1 = subprocess.Popen(["which", "Trinity"], stdout=subprocess.PIPE)
    except:
        t, v, tb = sys.exc_info()
        sys.stderr.write("You must set the environmental variable TRINITY_HOME to the base installation directory of Trinity before running {:s}.".format(sys.argv[0]))
        raise t, v, tb
    else:
        TrinityPath, err_info = pipe1.communicate()
        # FIX - probably should be checking err_info for errors...
        # Determine the TRINITY_BASE_DIR from output1.

8:28f6d3b8e931

    # I tried using "command -v Trinity" but for some reason, I was getting a OS permission error with that.
    # I just found distutils.spawn.find_executable() which might work, but already implemented the below.
    try:
        pipe1 = subprocess.Popen(["which", "Trinity"], stdout=subprocess.PIPE)
    except:
        msg = "You must set the environmental variable TRINITY_HOME to the base installation directory of Trinity before running {:s}.".format(sys.argv[0])
        sys.stderr.write(msg)
        t, v, tb = sys.exc_info()
        raise t, v, tb
    else:
        TrinityPath, err_info = pipe1.communicate()
        # FIX - probably should be checking err_info for errors...
        # Determine the TRINITY_BASE_DIR from output1.