Mercurial > repos > trinity_ctat > abundance_estimation_to_matrix
comparison abundance_estimation_to_matrix.xml @ 10:640b67a604f7 draft default tip
Adding profile info and exit code behavior. Making version numbers consistent. Upping test number.
| author | trinity_ctat |
|---|---|
| date | Fri, 06 Oct 2017 10:59:18 -0400 |
| parents | 4c943e196e8f |
| children |
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| 9:4c943e196e8f | 10:640b67a604f7 |
|---|---|
| 1 <tool id="abundance_estimation_to_matrix" name="abundance_estimation_to_matrix" version="1.0.0"> | 1 <tool id="abundance_estimation_to_matrix" name="abundance_estimation_to_matrix" version="1.0.0" profile="17.05"> |
| 2 | 2 |
| 3 <description>Join RSEM estimates from multiple samples into a single matrix</description> | 3 <description>Join RSEM estimates from multiple samples into a single matrix</description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="2.7">python</requirement> | 5 <requirement type="package" version="2.7">python</requirement> |
| 6 <requirement type="package" version="1.3.0">rsem</requirement> | 6 <requirement type="package" version="1.3.0">rsem</requirement> |
| 7 <requirement type="package">trinity</requirement> | 7 <requirement type="package">trinity</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <command> | 9 <command detect_errors="exit_code"> |
| 10 <![CDATA[ | 10 <![CDATA[ |
| 11 python $__tool_directory__/abundance_estimation_to_matrix_wrapper.py | 11 python $__tool_directory__/abundance_estimation_to_matrix_wrapper.py |
| 12 #for $q in $RSEM_samples | 12 #for $q in $RSEM_samples |
| 13 ${q.file} "${q.column_label}" | 13 ${q.file} "${q.column_label}" |
| 14 #end for | 14 #end for |