Mercurial > repos > tomnl > mspurity_frag4feature
comparison macros.xml @ 13:3ec3f8ba33e8 draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 4f88143938cc198436c2691443832c87e2c31cd0
| author | tomnl |
|---|---|
| date | Tue, 24 Sep 2019 08:02:57 -0400 |
| parents | a62b102788eb |
| children | 64431b9affe2 |
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| 12:a62b102788eb | 13:3ec3f8ba33e8 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <macros> | 2 <macros> |
| 3 <token name="@TOOL_VERSION@">1.11.4</token> | 3 <token name="@TOOL_VERSION@">1.11.4</token> |
| 4 <token name="@GALAXY_TOOL_VERSION@">0.2.5</token> | 4 <token name="@GALAXY_TOOL_VERSION@">0.2.6</token> |
| 5 | 5 |
| 6 <xml name="requirements"> | 6 <xml name="requirements"> |
| 7 <requirements> | 7 <requirements> |
| 8 <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement> | 8 <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement> |
| 9 <yield /> | 9 <yield /> |
| 106 <xml name="sm_input" token_ql='Query' token_dblabel="SQLite database" token_ql_shrt="Q" | 106 <xml name="sm_input" token_ql='Query' token_dblabel="SQLite database" token_ql_shrt="Q" |
| 107 token_user="True" token_mspuritydatalib="False" token_msp="False" token_help=""> | 107 token_user="True" token_mspuritydatalib="False" token_msp="False" token_help=""> |
| 108 <conditional name="@QL_SHRT@_dbPth_con"> | 108 <conditional name="@QL_SHRT@_dbPth_con"> |
| 109 <param name="@QL_SHRT@_dbPth_select" type="select" label="Input" help="@HELP@" > | 109 <param name="@QL_SHRT@_dbPth_select" type="select" label="Input" help="@HELP@" > |
| 110 <option value="sqlite" selected="@USER@" >SQLite database of (LC)-MS/MS data</option> | 110 <option value="sqlite" selected="@USER@" >SQLite database of (LC)-MS/MS data</option> |
| 111 <option value="local_config" selected="@USER@" >Locally configured MySQL or Postgres database</option> | 111 <option value="local_config" selected="@USER@" >Locally configured SQLite, MySQL or PostgreSQL database</option> |
| 112 <option value="msPurityData" selected="@MSPURITYDATALIB@" >Prepared database of MassBank, HMDB, LipidBlast and GNPS</option> | 112 <option value="msPurityData" selected="@MSPURITYDATALIB@" >Prepared database of MassBank, HMDB, LipidBlast and GNPS</option> |
| 113 </param> | 113 </param> |
| 114 <when value="sqlite"> | 114 <when value="sqlite"> |
| 115 <param type="data" name="@QL_SHRT@_dbPth" label="@QL@ SQLite database" format="sqlite" help=""/> | 115 <param type="data" name="@QL_SHRT@_dbPth" label="@QL@ SQLite database" format="sqlite" help=""/> |
| 116 </when> | 116 </when> |
| 246 value="@INSTRUMENT_TYPES_SELECT@" | 246 value="@INSTRUMENT_TYPES_SELECT@" |
| 247 label="Filter on instrument type?" help="" /> | 247 label="Filter on instrument type?" help="" /> |
| 248 <when value="true"> | 248 <when value="true"> |
| 249 <param name="@QL_SHRT@_instrumentTypes" type="select" multiple="true" | 249 <param name="@QL_SHRT@_instrumentTypes" type="select" multiple="true" |
| 250 help="" > | 250 help="" > |
| 251 <option value="APCI-ITFT">APCI-ITFT</option> | 251 <option value="APCI-ITFT" selected="true" >APCI-ITFT</option> |
| 252 <option value="CE-ESI-TOF" selected="true">CE-ESI-TOF</option> | 252 <option value="APCI-ITTOF" selected="true" >APCI-ITTOF</option> |
| 253 <option value="CE-ESI-TOF" selected="true" >CE-ESI-TOF</option> | |
| 253 <option value="CI-B">CI-B</option> | 254 <option value="CI-B">CI-B</option> |
| 254 <option value="EI-B">EI-B</option> | 255 <option value="EI-B">EI-B</option> |
| 255 <option value="EI-EBEB">EI-EBEB</option> | 256 <option value="EI-EBEB">EI-EBEB</option> |
| 256 <option value="ESI-ITFT" selected="true">ESI-ITFT</option> | 257 <option value="ESI-ITFT" selected="true" >ESI-ITFT</option> |
| 257 <option value="ESI-ITTOF" selected="true">ESI-ITTOF</option> | 258 <option value="ESI-ITTOF" selected="true" >ESI-ITTOF</option> |
| 258 <option value="ESI-QTOF" selected="true">ESI-QTOF</option> | 259 <option value="ESI-QFT" selected="true" >ESI-QFT</option> |
| 260 <option value="ESI-QTOF" selected="true" >ESI-QTOF</option> | |
| 261 <option value="ESI-TOF" selected="true" >ESI-TOF</option> | |
| 259 <option value="FAB-B">FAB-B</option> | 262 <option value="FAB-B">FAB-B</option> |
| 260 <option value="FAB-BE-MS">FAB-BE-MS</option> | 263 <option value="FAB-BE">FAB-BE</option> |
| 261 <option value="FAB-EB">FAB-EB</option> | 264 <option value="FAB-EB">FAB-EB</option> |
| 262 <option value="FAB-EBEB">FAB-EBEB</option> | 265 <option value="FAB-EBEB">FAB-EBEB</option> |
| 266 <option value="FAB-EBEB">FD-B</option> | |
| 263 <option value="FI-B">FI-B</option> | 267 <option value="FI-B">FI-B</option> |
| 268 <option value="Flow-injection QqQ/MS">Flow-injection QqQ/MS</option> | |
| 264 <option value="GC-EI-Q">GC-EI-Q</option> | 269 <option value="GC-EI-Q">GC-EI-Q</option> |
| 265 <option value="GC-EI-QQ">GC-EI-QQ</option> | 270 <option value="GC-EI-QQ">GC-EI-QQ</option> |
| 266 <option value="GC-EI-TOF">GC-EI-TOF</option> | 271 <option value="GC-EI-TOF">GC-EI-TOF</option> |
| 267 <option value="LC-APCI-QTOF">LC-APCI-QTOF</option> | 272 <option value="GC-MS">GC-MS</option> |
| 273 <option value="Hybrid FT">Hybrid FT</option> | |
| 274 <option value="in source CID" selected="true" >in source CID</option> | |
| 275 <option value="In-silico QTOF" selected="true" >In-silico QTOF</option> | |
| 276 <option value="Ion trap" selected="true" >Ion trap</option> | |
| 277 <option value="LC-APCI-ITFT" selected="true" >LC-APCI-ITFT</option> | |
| 278 <option value="LC-APCI-QTOF" selected="true" >LC-APCI-QTOF</option> | |
| 279 <option value="LC-APCI-Q" selected="true">LC-APCI-Q</option> | |
| 268 <option value="LC-APPI-QQ">LC-APPI-QQ</option> | 280 <option value="LC-APPI-QQ">LC-APPI-QQ</option> |
| 269 <option value="LC-ESI-IT" selected="true">LC-ESI-IT</option> | 281 <option value="LC-ESI-IT" selected="true">LC-ESI-IT</option> |
| 270 <option value="LC-ESI-ITFT" selected="true">LC-ESI-ITFT</option> | 282 <option value="LC-ESI-ITFT" selected="true">LC-ESI-ITFT</option> |
| 271 <option value="LC-ESI-ITTOF" selected="true">LC-ESI-ITTOF</option> | 283 <option value="LC-ESI-ITTOF" selected="true">LC-ESI-ITTOF</option> |
| 272 <option value="LC-ESI-Q">LC-ESI-Q</option> | 284 <option value="LC-ESI-Q" selected="true">LC-ESI-Q</option> |
| 273 <option value="LC-ESI-QFT" selected="true" >LC-ESI-QFT</option> | 285 <option value="LC-ESI-QFT" selected="true">LC-ESI-QFT</option> |
| 274 <option value="LC-ESI-QIT" selected="true">LC-ESI-QIT</option> | 286 <option value="LC-ESI-QIT" selected="true">LC-ESI-QIT</option> |
| 275 <option value="LC-ESI-QQ" selected="true">LC-ESI-QQ</option> | 287 <option value="LC-ESI-QQ" selected="true">LC-ESI-QQ</option> |
| 276 <option value="LC-ESI-QTOF" selected="true">LC-ESI-QTOF</option> | 288 <option value="LC-ESI-QTOF" selected="true">LC-ESI-QTOF</option> |
| 277 <option value="LC-ESI-TOF" selected="true">LC-ESI-TOF</option> | 289 <option value="LC-ESI-TOF" selected="true">LC-ESI-TOF</option> |
| 278 <option value="MALDI-QIT">MALDI-QIT</option> | 290 <option value="LC-Q-TOF/MS" selected="true">LC-Q-TOF/MS</option> |
| 279 <option value="MALDI-TOF">MALDI-TOF</option> | 291 <option value="LC-QTOF" selected="true">LC-QTOF</option> |
| 280 <option value="ALDI-TOFTOF">ALDI-TOFTOF</option> | 292 <option value="Linear Ion Trap" selected="true">Linear Ion Trap</option> |
| 293 <option value="LIT" selected="true">LIT</option> | |
| 294 <option value="MALDI-QIT" selected="true">MALDI-QIT</option> | |
| 295 <option value="MALDI-TOF" selected="true">MALDI-TOF</option> | |
| 296 <option value="MALDI-TOFTOF" selected="true">MALDI-TOFTOF</option> | |
| 297 <option value="orbitrap" selected="true">orbitrap</option> | |
| 298 <option value="QIT" selected="true">QIT</option> | |
| 299 <option value="QIT-FT" selected="true">QIT-FT</option> | |
| 300 <option value="QIT-TOF" selected="true">QIT-TOF</option> | |
| 301 <option value="QqQ" selected="true">QqQ</option> | |
| 302 <option value="Q-TOF" selected="true">Q-TOF</option> | |
| 303 <option value="Quattro_QQQ" selected="true">Quattro_QQQ</option> | |
| 281 <option value="none">None</option> | 304 <option value="none">None</option> |
| 282 </param> | 305 </param> |
| 283 <param name="@QL_SHRT@_instrumentTypesUser" type="text" value="" | 306 <param name="@QL_SHRT@_instrumentTypesUser" type="text" value="" |
| 284 help="Types of the instruments to be included in the search. Use a comma to | 307 help="Types of the instruments to be included in the search. Use a comma to |
| 285 separate the instrument types or leave empty to ignore filter."/> | 308 separate the instrument types or leave empty to ignore filter."/> |