Mercurial > repos > tomnl > mspurity_flagremove

diff purityA.R @ 12:2c8b5a640a04 draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit bbbcc75d51c020446fd00d76f908a6250266cfea
author tomnl
date Fri, 13 Sep 2019 11:49:43 -0400
parents ca0ac330f1a4
children
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--- a/purityA.R	Thu Jun 27 12:28:15 2019 -0400
+++ b/purityA.R	Fri Sep 13 11:49:43 2019 -0400
@@ -15,7 +15,8 @@
   make_option("--mostIntense", action="store_true"),
   make_option("--plotP", action="store_true"),
   make_option("--nearest", action="store_true"),
-  make_option("--cores", default=4)
+  make_option("--cores", default=4),
+  make_option("--ppmInterp", default=7)
 )
 
 opt <- parse_args(OptionParser(option_list=option_list))
@@ -97,7 +98,8 @@
                         ilim = opt$ilim,
                         mzRback = "pwiz",
                         isotopes = isotopes,
-                        im = im)
+                        im = im,
+                        ppmInterp = opt$ppmInterp)
 
 
 if (!is.null(opt$galaxy_names)){