Mercurial > repos > tomnl > mspurity_flagremove
comparison flagRemove.R @ 7:64374e7beba1 draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 781bf118b12bf8f32e540932f4aaa3170f88b2ce
| author | tomnl |
|---|---|
| date | Tue, 18 Jun 2019 14:25:03 -0400 |
| parents | 59c1f9077c3b |
| children |
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| 6:ad24f23e7d53 | 7:64374e7beba1 |
|---|---|
| 124 #loads an RData file, and returns the named xset object if it is there | 124 #loads an RData file, and returns the named xset object if it is there |
| 125 load(rdata_path) | 125 load(rdata_path) |
| 126 return(get(ls()[ls() %in% name])) | 126 return(get(ls()[ls() %in% name])) |
| 127 } | 127 } |
| 128 | 128 |
| 129 xset <- loadRData(opt$xset_path, c('xset','xdata')) | 129 xset <- getxcmsSetObject(loadRData(opt$xset_path, c('xset','xdata'))) |
| 130 | 130 |
| 131 print(xset) | 131 print(xset) |
| 132 if (is.null(opt$samplelist)){ | 132 if (is.null(opt$samplelist)){ |
| 133 blank_class <- opt$blank_class | 133 blank_class <- opt$blank_class |
| 134 }else{ | 134 }else{ |
