Mercurial > repos > tomnl > mspurity_dimspredictpuritysingle

comparison macros.xml @ 11:a90832e6acb2 draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit bbbcc75d51c020446fd00d76f908a6250266cfea
author tomnl
date Fri, 13 Sep 2019 11:57:28 -0400
parents 1ce857d74106
children d70fd233784a
comparison
equal deleted inserted replaced
10:1ce857d74106 11:a90832e6acb2
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">1.11.3</token> 3 <token name="@TOOL_VERSION@">1.11.4</token>
4 <token name="@GALAXY_TOOL_VERSION@">0.2.5</token> 4 <token name="@GALAXY_TOOL_VERSION@">0.2.5</token>
5 5
6 <xml name="requirements"> 6 <xml name="requirements">
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement> 8 <requirement type="package" version="@TOOL_VERSION@" >bioconductor-mspurity</requirement>
105 105
106 <xml name="sm_input" token_ql='Query' token_dblabel="SQLite database" token_ql_shrt="Q" 106 <xml name="sm_input" token_ql='Query' token_dblabel="SQLite database" token_ql_shrt="Q"
107 token_user="True" token_mspuritydatalib="False" token_msp="False" token_help=""> 107 token_user="True" token_mspuritydatalib="False" token_msp="False" token_help="">
108 <conditional name="@QL_SHRT@_dbPth_con"> 108 <conditional name="@QL_SHRT@_dbPth_con">
109 <param name="@QL_SHRT@_dbPth_select" type="select" label="Input" help="@HELP@" > 109 <param name="@QL_SHRT@_dbPth_select" type="select" label="Input" help="@HELP@" >
110 <option value="userdb" selected="@USER@" >SQLite database of (LC)-MS/MS data</option> 110 <option value="sqlite" selected="@USER@" >SQLite database of (LC)-MS/MS data</option>
111 <option value="local_config" selected="@USER@" >Locally configured MySQL or Postgres database</option>
111 <option value="msPurityData" selected="@MSPURITYDATALIB@" >Prepared database of MassBank, HMDB, LipidBlast and GNPS</option> 112 <option value="msPurityData" selected="@MSPURITYDATALIB@" >Prepared database of MassBank, HMDB, LipidBlast and GNPS</option>
112 <option value="msp" >MSP file (SQLite database will be created using using msp2db)</option>
113 </param> 113 </param>
114 <when value="userdb"> 114 <when value="sqlite">
115 <param type="data" name="@QL_SHRT@_dbPth" label="@QL@ SQLite database" format="sqlite" help=""/> 115 <param type="data" name="@QL_SHRT@_dbPth" label="@QL@ SQLite database" format="sqlite" help=""/>
116 </when> 116 </when>
117 <when value="msp"> 117 <when value="local_config">
118 <param type="data" name="@QL_SHRT@_msp" label="@QL@ MSP file" format="msp" help=""/> 118 </when>
119 </when>
120
121 <when value="msPurityData"> 119 <when value="msPurityData">
122 </when> 120 </when>
123 </conditional> 121 </conditional>
124 </xml> 122 </xml>
125 123