Mercurial > repos > tomnl > mspurity_createdatabase

diff createDatabase.R @ 5:6c2ab7d0805d draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 14eafbdb65f491713d1314d77c454defd137c392
author tomnl
date Tue, 18 Jun 2019 11:10:54 -0400
parents 7a3f8bd7757d
children c34cdaca2fcb
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--- a/createDatabase.R	Tue Jun 18 10:51:44 2019 -0400
+++ b/createDatabase.R	Tue Jun 18 11:10:54 2019 -0400
@@ -156,10 +156,10 @@
   }
 
   xset@peaks <- as.matrix(plyr::ddply(data.frame(xset@peaks), ~ sample, convert2Raw, xset=xset))
-
+  closeAllConnections()
   # Saves the EICS into the previously created database
   px <- msPurity::purityX(xset, saveEIC = TRUE,
-                           cores=2, sqlitePth=dbPth,
+                           cores=1, sqlitePth=dbPth,
                            rtrawColumns = TRUE)
 
 }