Mercurial > repos > tomnl > mspurity_createdatabase

comparison createDatabase.xml @ 7:a3a969a82106 draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit a1a069e7537aa4594974c74a08fb6e81e527203d
author tomnl
date Wed, 19 Jun 2019 09:27:01 -0400
parents 7c0834ead235
children c34cdaca2fcb
comparison
equal deleted inserted replaced
6:530dc7c80add 7:a3a969a82106
77 <param name="camera_xcms" value="xcms"/> 77 <param name="camera_xcms" value="xcms"/>
78 <param name="xset_xa" value="xset_group_LCMS_1_LCMS_2_LCMSMS_1_LCMSMS_2.RData"/> 78 <param name="xset_xa" value="xset_group_LCMS_1_LCMS_2_LCMSMS_1_LCMSMS_2.RData"/>
79 <param name="pa" value="averageFragSpectra_output_all.RData"/> 79 <param name="pa" value="averageFragSpectra_output_all.RData"/>
80 <output name="createDatabase_output_sqlite" value="createDatabase_output.sqlite" ftype="sqlite" compare="sim_size"/> 80 <output name="createDatabase_output_sqlite" value="createDatabase_output.sqlite" ftype="sqlite" compare="sim_size"/>
81 </test> 81 </test>
82 <test>
83 <conditional name="file_load_conditional">
84 <param name="file_load_select" value="yes"/>
85 <param name="input" >
86 <collection type="list">
87 <element name="LCMS_1.mzML" value="LCMS_1.mzML"/>
88 <element name="LCMS_2.mzML" value="LCMS_2.mzML"/>
89 <element name="LCMSMS_1.mzML" value="LCMSMS_1.mzML"/>
90 <element name="LCMSMS_2.mzML" value="LCMSMS_2.mzML"/>
91 </collection>
92 </param>
93 </conditional>
94 <param name="camera_xcms" value="xcms"/>
95 <param name="eic" value="true"/>
96 <param name="xset_xa" value="xset_group_LCMS_1_LCMS_2_LCMSMS_1_LCMSMS_2.RData"/>
97 <param name="pa" value="averageFragSpectra_output_all.RData"/>
98 <output name="createDatabase_output_sqlite" value="createDatabase_output_eic.sqlite" ftype="sqlite" compare="sim_size"/>
99 </test>
82 </tests> 100 </tests>
83 101
84 <help><![CDATA[ 102 <help><![CDATA[
85 ============================================================= 103 =============================================================
86 Create SQLite database for LC-MS(/MS) dataset 104 Create SQLite database for LC-MS(/MS) dataset