Mercurial > repos > tomnl > mspurity_combineannotations

diff createDatabase.R @ 4:68c405751ef6 draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 14eafbdb65f491713d1314d77c454defd137c392
author tomnl
date Tue, 18 Jun 2019 11:14:17 -0400
parents b22aa0a9fc25
children 8d26c0db867c
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line diff
--- a/createDatabase.R	Tue Jun 18 10:08:40 2019 -0400
+++ b/createDatabase.R	Tue Jun 18 11:14:17 2019 -0400
@@ -156,10 +156,10 @@
   }
 
   xset@peaks <- as.matrix(plyr::ddply(data.frame(xset@peaks), ~ sample, convert2Raw, xset=xset))
-
+  closeAllConnections()
   # Saves the EICS into the previously created database
   px <- msPurity::purityX(xset, saveEIC = TRUE,
-                           cores=1, sqlitePth=db_pth,
+                           cores=1, sqlitePth=dbPth,
                            rtrawColumns = TRUE)
 
 }