Mercurial > repos > tomnl > frag4feature

comparison create_sqlite_db.R @ 17:4040aff52722 draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit e6935a8c6a3da23f47a753ab5a8159fa9d165535-dirty
author tomnl
date Sun, 13 May 2018 13:05:35 -0400
parents 7468b701f065
children 227e7ea23bb3
comparison
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16:7468b701f065 17:4040aff52722
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116 db_pth <- msPurity::create_database(pa, xset=xset, xsa=xa, out_dir=opt$out_dir, 116 db_pth <- msPurity::create_database(pa, xset=xset, xsa=xa, out_dir=opt$out_dir,
117 grp_peaklist=grp_peaklist, db_name=opt$db_name) 117 grp_peaklist=grp_peaklist, db_name=opt$db_name)
118 DBI::dbDisconnect() 118
119 print(db_pth) 119 print(db_pth)
120 120
121 if (!is.null(opt$eic)){ 121 if (!is.null(opt$eic)){
122 if (is.null(opt$raw_rt_columns)){ 122 if (is.null(opt$raw_rt_columns)){
123 rtrawColumns <- FALSE 123 rtrawColumns <- FALSE