# HG changeset patch
# User tomnl
# Date 1525337917 14400
# Node ID 11ee7db33f60586faa6d98fafca3ab6b19a7ac62
# Parent  8b0b5b25c177b07b9d6abd33af709c283ff6ac12
planemo upload for repository https://github.com/computational-metabolomics/dma-tools-galaxy commit d4159f1962ef3fe37dd4f3047e4050afe013c15a-dirty

diff -r 8b0b5b25c177 -r 11ee7db33f60 deconrank.xml
--- a/deconrank.xml	Mon Apr 23 05:43:45 2018 -0400
+++ b/deconrank.xml	Thu May 03 04:58:37 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="deconrank" name="deconrank" version="0.3.4">
+<tool id="deconrank" name="deconrank" version="0.3.5">
     <description>Deconvolute adducts and isotopes then score and rank for fragmentation</description>
     <requirements>
         <requirement type="package" version="0.0.29">deconrank</requirement>
@@ -83,8 +83,8 @@
             <option value="[M+3]+">[M+3]+</option>
             <option value="[M+4]+">[M+4]+</option>
             <option value="[M]2+">[M]2+</option>
-            <option value="[M+1]2+">[M+1]2+</option>
-            <option value="[M+2]2+">[M+2]2+</option>
+            <option value="[M+1]2+" selected="true">[M+1]2+</option>
+            <option value="[M+2]2+" selected="true">[M+2]2+</option>
             <option value="[M+3]2+">[M+3]2+</option>
             <option value="[M+4]2+">[M+4]2+</option>
             <option value="[M]3+">[M]3+</option>
@@ -92,6 +92,22 @@
             <option value="[M+2]3+">[M+2]3+</option>
             <option value="[M+3]3+">[M+3]3+</option>
             <option value="[M+4]3+">[M+4]3+</option>
+
+            <option value="[M]-">[M]-</option>
+            <option value="[M+1]-" selected="true">[M+1]-</option>
+            <option value="[M+2]-" selected="true" >[M+2]-</option>
+            <option value="[M+3]-">[M+3]-</option>
+            <option value="[M+4]-">[M+4]-</option>
+            <option value="[M]2-">[M]2-</option>
+            <option value="[M+1]2-" selected="true" >[M+1]2-</option>
+            <option value="[M+2]2-" selected="true" >[M+2]2-</option>
+            <option value="[M+3]2-" >[M+3]2-</option>
+            <option value="[M+4]2-">[M+4]2-</option>
+            <option value="[M]3-">[M]3-</option>
+            <option value="[M+1]3-">[M+1]3-</option>
+            <option value="[M+2]3-">[M+2]3-</option>
+            <option value="[M+3]3-">[M+3]3-</option>
+            <option value="[M+4]3-">[M+4]3-</option>
         </param>
 
         <param name="full_output" type="boolean" label="Use extended output for the scores tsv file?"/>