Mercurial > repos > tomnl > create_sqlite_db

diff anticipated_purity_dims.R @ 7:d7f4696a1f86 draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 0aa10df0ec1ed71601f932cfb11d7d4d4f620d80-dirty
author tomnl
date Wed, 02 May 2018 13:24:26 -0400
parents 3d8bde261c95
children f6996ad60d8f
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--- a/anticipated_purity_dims.R	Mon Apr 23 10:16:41 2018 -0400
+++ b/anticipated_purity_dims.R	Wed May 02 13:24:26 2018 -0400
@@ -32,7 +32,8 @@
 }else{
   indf <- read.table(opt$peaks_file,
                      header = TRUE, sep='\t', stringsAsFactors = FALSE)
-  filename = colnames(indf)[8:ncol(indf)][opt$dimspy_file_num]
+
+  filename = colnames(indf)[8:ncol(indf)][opt$file_num_dimspy]
   # check if the data file is mzML or RAW (can only use mzML currently) so
   # we expect an mzML file of the same name in the same folder
   indf$i <- indf[,colnames(indf)==filename]