Mercurial > repos > tomnl > create_msp

comparison create_sqlite_db.R @ 15:c3190cff5cd2 draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 04023134d8f28e85927ca293373c506484149ead-dirty
author tomnl
date Sat, 02 Jun 2018 05:12:48 -0400
parents 6d9a3b70504d
children fe8db74d2624
comparison
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14:6d9a3b70504d 15:c3190cff5cd2
211 add_extra_table_elucidation('sirius_csifingerid_results', opt$sirius_csifingerid_result, con) 211 add_extra_table_elucidation('sirius_csifingerid_results', opt$sirius_csifingerid_result, con)
212 212
213 213
214 if (is.null(xset)){ 214 if (is.null(xset)){
215 DBI::dbWriteTable(con, name='xset_classes', value=xa@xcmsSet@phenoData, row.names=TRUE) 215 DBI::dbWriteTable(con, name='xset_classes', value=xa@xcmsSet@phenoData, row.names=TRUE)
216 add_probmetab(opt$probmetab_result, xset, con) 216 add_probmetab(opt$probmetab_result, xa@xcmsSet, con)
217 }else{ 217 }else{
218 218
219 DBI::dbWriteTable(con, name='xset_classes', value=xset@phenoData, row.names=TRUE) 219 DBI::dbWriteTable(con, name='xset_classes', value=xset@phenoData, row.names=TRUE)
220 add_probmetab(opt$probmetab_result, xset, con) 220 add_probmetab(opt$probmetab_result, xset, con)
221 221