Mercurial > repos > tomnl > create_msp
comparison create_sqlite_db.R @ 7:837a4eab8180 draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit e6935a8c6a3da23f47a753ab5a8159fa9d165535-dirty
| author | tomnl |
|---|---|
| date | Sun, 13 May 2018 13:02:15 -0400 |
| parents | a5042433dc8a |
| children | 48726946ae3f |
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| 6:a5042433dc8a | 7:837a4eab8180 |
|---|---|
| 113 | 113 |
| 114 | 114 |
| 115 | 115 |
| 116 db_pth <- msPurity::create_database(pa, xset=xset, xsa=xa, out_dir=opt$out_dir, | 116 db_pth <- msPurity::create_database(pa, xset=xset, xsa=xa, out_dir=opt$out_dir, |
| 117 grp_peaklist=grp_peaklist, db_name=opt$db_name) | 117 grp_peaklist=grp_peaklist, db_name=opt$db_name) |
| 118 DBI::dbDisconnect() | 118 |
| 119 print(db_pth) | 119 print(db_pth) |
| 120 | 120 |
| 121 if (!is.null(opt$eic)){ | 121 if (!is.null(opt$eic)){ |
| 122 if (is.null(opt$raw_rt_columns)){ | 122 if (is.null(opt$raw_rt_columns)){ |
| 123 rtrawColumns <- FALSE | 123 rtrawColumns <- FALSE |