Mercurial > repos > tomnl > assess_purity_msms
diff macros.xml @ 1:c694d8172abf draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 2e847122cf605951c334858455fc1d3ebdb189e9-dirty
| author | tomnl |
|---|---|
| date | Tue, 27 Mar 2018 05:41:35 -0400 |
| parents | b6b051e7a5ef |
| children | 7e633c70fdfc |
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--- a/macros.xml Mon Mar 05 10:08:14 2018 -0500 +++ b/macros.xml Tue Mar 27 05:41:35 2018 -0400 @@ -2,7 +2,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.4.5" >bioconductor-mspurity</requirement> + <requirement type="package" version="1.5.2" >bioconductor-mspurity</requirement> <requirement type="package" version="1.4.4" >r-optparse</requirement> <yield /> </requirements> @@ -54,9 +54,14 @@ </xml> - - - + <xml name="camera_xcms"> + <param name="camera_xcms" type="select" label="Use CAMERA object or XCMS object from RData?" + help="Within the RData file there should be either an XCMS object called xset or a CAMERA object called + xa (or both). The XCMS object is nested within the CAMERA object so either can be used"> + <option value="xcms" selected="true" >XCMS (xset)</option> + <option value="camera" >CAMERA (xa)</option> + </param> + </xml> <xml name="fileload"> @@ -78,7 +83,21 @@ </conditional> </xml> - + <xml name="grp_peaklist"> + <conditional name="grp_peaklist_opt"> + <param name="grp_peaklist_opt" type="select" label="Add a different grouped peaklist to database?"> + <option value="yes" >Provide group peaklist </option> + <option value="no" selected="true">Use default grouped peaklist</option> + </param> + <when value="no"> + </when> + <when value="yes"> + <param type="data" name="grp_peaklist" label="grouped peaklist" + help="User supplied grouped peaklist to add to the database (if additional columns required e.g. + CAMERA annotations" format="tsv,tabular"/> + </when> + </conditional> + </xml> <xml name="citations"> <citations>