# HG changeset patch
# User tomnl
# Date 1522418536 14400
# Node ID 48967c9354c17ef11dbe38ac6f3918b6031de4c8
# Parent  f5f04305ff9fb8f993914a176363f9fd86165eb0
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 2e847122cf605951c334858455fc1d3ebdb189e9-dirty

diff -r f5f04305ff9f -r 48967c9354c1 anticipated_purity_lcms.xml
--- a/anticipated_purity_lcms.xml	Tue Mar 27 12:25:01 2018 -0400
+++ b/anticipated_purity_lcms.xml	Fri Mar 30 10:02:16 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="anticipated_purity_lcms" name="anticipated_purity_lcms" version="0.0.4">
+<tool id="anticipated_purity_lcms" name="anticipated_purity_lcms" version="0.0.5">
         <description>Calculate the anticipated precursor ion purity from a LC-MS XCMS dataset.
     </description>
     <macros>
diff -r f5f04305ff9f -r 48967c9354c1 frag4feature.R
--- a/frag4feature.R	Tue Mar 27 12:25:01 2018 -0400
+++ b/frag4feature.R	Fri Mar 30 10:02:16 2018 -0400
@@ -19,13 +19,15 @@
 
     nsave <- names(pa@fileList)
     old_filenames  <- basename(pa@fileList)
+ 
     pa@fileList <- filepaths[match(names(pa@fileList), galaxy_names)]
     names(pa@fileList) <- nsave
 
     pa@puritydf$filename <- basename(pa@fileList[match(pa@puritydf$filename, old_filenames)])
     pa@grped_df$filename <- basename(pa@fileList[match(pa@grped_df$filename, old_filenames)])
   }
-
+ print(pa@fileList)
+ print(xset@filepaths)
 
  if(!all(basename(pa@fileList)==basename(xset@filepaths))){
     if(!all(names(pa@fileList)==basename(xset@filepaths))){
diff -r f5f04305ff9f -r 48967c9354c1 macros.xml
--- a/macros.xml	Tue Mar 27 12:25:01 2018 -0400
+++ b/macros.xml	Fri Mar 30 10:02:16 2018 -0400
@@ -2,7 +2,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-           <requirement type="package" version="1.5.2" >bioconductor-mspurity</requirement>
+           <requirement type="package" version="1.5.4" >bioconductor-mspurity</requirement>
            <requirement type="package" version="1.4.4" >r-optparse</requirement>
             <yield />
         </requirements>