# HG changeset patch
# User tomnl
# Date 1527931058 14400
# Node ID 1d0ae59b27710ff7d16d356e14eecf4280e6be0c
# Parent  b48824808bab72b792c2457278b4c41401b6b572
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 04023134d8f28e85927ca293373c506484149ead-dirty

diff -r b48824808bab -r 1d0ae59b2771 create_sqlite_db.R
--- a/create_sqlite_db.R	Fri Jun 01 15:31:47 2018 -0400
+++ b/create_sqlite_db.R	Sat Jun 02 05:17:38 2018 -0400
@@ -213,7 +213,7 @@
 
 if (is.null(xset)){
   DBI::dbWriteTable(con, name='xset_classes', value=xa@xcmsSet@phenoData, row.names=TRUE)
-  add_probmetab(opt$probmetab_result, xset,  con)
+  add_probmetab(opt$probmetab_result, xa@xcmsSet,  con)
 }else{
 
   DBI::dbWriteTable(con, name='xset_classes', value=xset@phenoData, row.names=TRUE)