|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="R" version="3.0.2">
|
|
|
4 <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6 <package name="bioc_limma" version="3.22.1">
|
|
|
7 <install version="1.0">
|
|
|
8 <actions>
|
|
|
9 <action type="download_file">http://www.bioconductor.org/packages/release/bioc/src/contrib/limma_3.22.1.tar.gz</action>
|
|
|
10 <action type="set_environment_for_install">
|
|
|
11 <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
|
|
|
12 <package name="R" version="3.0.2" />
|
|
|
13 </repository>
|
|
|
14 </action>
|
|
|
15 <action type="shell_command">export R_LIBS=$INSTALL_DIR && R CMD INSTALL limma_3.22.1.tar.gz</action>
|
|
|
16 <action type="set_environment">
|
|
|
17 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
|
|
|
18 </action>
|
|
|
19 </actions>
|
|
|
20 </install>
|
|
|
21 <readme>
|
|
|
22 </readme>
|
|
|
23 </package>
|
|
|
24 </tool_dependency>
|
