Mercurial > repos > tiagoantao > raxml

diff raxml.xml @ 15:ac873ecba2e8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 6d4b6d49afc22782142019d31fc335d7d542b307
author tiagoantao
date Mon, 02 Nov 2015 15:41:20 -0500
parents d9849b4a003b
children dc5debb738a1
line wrap: on
line diff
--- a/raxml.xml	Mon Nov 02 15:38:19 2015 -0500
+++ b/raxml.xml	Mon Nov 02 15:41:20 2015 -0500
@@ -1,8 +1,8 @@
 <tool id="raxml" name="Phyogenetic reconstruction with RaXML" version="1.0.1">
+  <description>- Maximum Likelihood based inference of large phylogenetic trees</description>
   <requirements>
     <requirement type='package' version="8.2.4">raxml</requirement>
   </requirements>
-  <description>- Maximum Likelihood based inference of large phylogenetic trees</description>
   <command interpreter="python">raxml.py
     ## Required parameters 
     ## Program name and threads are hard-coded as they are dependent on the binary and threads are specified in the Galaxy's tool configuration
@@ -546,7 +546,7 @@
           <param name="model_type" value="nucleotide"/>
           <param name="base_model" value="GTRCAT"/>
           <output name="bestTreeReq" file="RAxML_bestTree.galaxy"/>
-          <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy"/>
+          <output name="parsimonyTreeReq" file="RAxML_parsimonyTree.galaxy">
               <assert_contents>
                 <has_text_matching expression="Frog" />
               </assert_contents>