Mercurial > repos > tiagoantao > raxml

diff raxml.xml @ 40:7f7a15dc5b83 draft

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planemo upload commit 34bbc567766bf5b1986ee91bb3e46c542a45e658-dirty
author tiagoantao
date Fri, 13 Nov 2015 14:48:40 -0500
parents 263441e91fbd
children 9b315740c5e8
line wrap: on
line diff
--- a/raxml.xml	Fri Nov 13 14:25:07 2015 -0500
+++ b/raxml.xml	Fri Nov 13 14:48:40 2015 -0500
@@ -8,13 +8,13 @@
     ## binary is hard-coded to the pthreads enabled raxml executable if threads > 1
     ## (-T)
     ## Cannot have --threads 1
-    #set $slots = $GALAXY_SLOTS or 1
-    #if $slots is None or $slots == 1:
+    #$slots = $getVar('GALAXY_SLOTS', 1)
+    #if $slots == 1:
         --binary "raxmlHPC"
         --threads 1
     #else:
         --binary "raxmlHPC-PTHREADS"
-        --threads $GALAXY_SLOTS
+        --threads $slots
     #end if
     ## (-s)
     --source $infile